Aurantimicrobium photophilum: AURMO_00166
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Entry
AURMO_00166 CDS
T05480
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aum
Aurantimicrobium photophilum
Pathway
aum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AURMO_00166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aum03019
]
AURMO_00166
03009 Ribosome biogenesis [BR:
aum03009
]
AURMO_00166
Enzymes [BR:
aum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AURMO_00166
Messenger RNA biogenesis [BR:
aum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AURMO_00166
Ribosome biogenesis [BR:
aum03009
]
Prokaryotic type
rRNA helicases
AURMO_00166
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
adh_short
HEM4
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AWR20785
UniProt:
A0A2Z3RV43
LinkDB
All DBs
Position
155124..157025
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AA seq
633 aa
AA seq
DB search
MTSSETSDKTEEATAPATIPFSELGLSDAVLKSLKDVGYEIPSAIQAATIPILLEGKDVV
GLAQTGTGKTAAFALPILSRLDLSQKSPQALVLAPTRELALQVCEAFEKYASHMKGVHVL
PVYGGQGYGTQLSALRRGVHIVVGTPGRIMDHLQKGTLDLTALKYLVLDEADEMLKMGFA
EDVETILADTPSDKQVALFSATMPAQIRRISKQYLNDPEEITIKNKTTTSSTITQRYLMV
SYPQKVDALTRILEVENFEGMIIFTRTKNETETLAEKLRARGYSAMAINGDVPQATRERT
VEQLKSGKLDILVATDVAARGLDVERISHVVNFDIPIDTESYVHRIGRTGRAGRSGAAIS
FVTPRESRLLNAIERATRQPLTQMQLPSVEDVNVTRLARFDDAITEALAQPNLILQFREI
VGHYIEHHDVPEADVAAALAVVAQGDTPLLLSAEDERAQRYAREEQTRKERAERGDRGDR
GGRNDRGGRNDRGDRGDRGDRGGRPSRDDRYSRDDRPPRERFNREDRPERRPRESNQPMS
SYRIEVGKRHKVEPRQIVGALANEGGLSRDDFGAIKILPDHSIVELPANLGNDVFGRLEG
TRISGKLIELRADSSSSARRDDRDERPARKPRH
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcatccgaaacatccgataagaccgaggaagcaactgctcccgcaaccatcccg
ttcagcgaactggggttgtccgacgcagtcctcaagtctctgaaggatgtcggttacgaa
attccttccgctattcaggcagccacgatccccatcctccttgagggaaaggatgttgtt
ggtcttgcccagactggtaccggtaagaccgcagcttttgcactgcccattctttctcgc
ctggacctctctcagaagagcccacaggcccttgtactagctcctacccgtgaactcgca
ctccaggtctgtgaagctttcgagaagtatgcctcccacatgaagggcgtgcacgttctt
cctgtttatggtggccagggttatggcacccagctttctgcactgcgtcgtggagtccac
attgtggtgggaactcccggtcgcatcatggaccaccttcaaaagggaactcttgatctc
accgcgctgaagtacttagtcctcgatgaggcagatgaaatgctcaagatgggctttgct
gaggacgttgagacgatcctcgctgacacaccttcggacaagcaggtggcactgttctcg
gcaaccatgcctgcccagattcgccggatttcgaagcagtacctcaacgatcccgaagag
atcacgatcaagaacaagaccacaacctcttcgaccatcacgcagcgatacctcatggtc
tcctatccccaaaaggtggatgcgctcacccgcatcctcgaagttgaaaacttcgaaggc
atgatcatcttcacccgcaccaagaacgaaaccgagacgttggcagagaaactccgcgct
cgcggatactccgccatggcaattaatggtgacgttcctcaggccacgcgagagcgcacg
gttgaacagctcaagtccggcaagctcgacatcttggttgccaccgatgttgcagcacgt
ggtttggacgtcgaacgcattagccacgtggtcaactttgatattccgattgataccgag
tcttatgttcaccgcattggccgcaccggccgtgcgggacgcagcggagctgcaatcagc
ttcgttactccccgagagagcagactcctcaacgccatcgagcgcgcaacgcgtcagcca
ctgacccagatgcagctgccgagcgtggaagacgtcaacgtcacacgtctggctcgcttc
gacgatgccattactgaagcgctcgctcagccaaacctcattctccagttccgtgagatt
gttggccactacatcgaacaccacgatgttccagaagctgatgttgccgccgctcttgct
gttgttgctcagggtgacactcctcttctgctctctgcagaggacgagcgcgcacagcgt
tacgcacgtgaagagcagacccgcaaggaacgtgctgaacgtggtgaccgcggagaccga
ggtggtcgtaatgaccgaggtggtcgtaatgaccgcggtgaccggggcgatcgcggagac
cgcgggggacgtccttctcgggatgatcgctactctcgtgacgaccgcccaccccgtgag
cgtttcaaccgtgaggatcgcccagagcgtcgtccacgcgagagcaaccagcccatgtcc
tcttacagaattgaagtgggcaagcgacacaaggttgagcctcgccaaattgtgggtgct
cttgctaacgagggtggcctcagccgcgatgactttggcgcgatcaagattcttcccgat
cactccattgttgaacttcccgcaaacctcggaaatgatgttttcggcaggctcgaggga
acccgcatcagcggaaagctcatcgagcttcgtgctgacagctcttcctctgctcgtcgt
gacgatcgcgacgagcgcccagcacgcaagccacgtcactaa
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