Aurantimicrobium photophilum: AURMO_00178
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Entry
AURMO_00178 CDS
T05480
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aum
Aurantimicrobium photophilum
Pathway
aum03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aum00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AURMO_00178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aum03021
]
AURMO_00178
03400 DNA repair and recombination proteins [BR:
aum03400
]
AURMO_00178
Enzymes [BR:
aum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AURMO_00178
Transcription machinery [BR:
aum03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AURMO_00178
DNA repair and recombination proteins [BR:
aum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AURMO_00178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AWR20797
UniProt:
A0A2Z3RVA2
LinkDB
All DBs
Position
167361..171236
Genome browser
AA seq
1291 aa
AA seq
DB search
MLDATAFDKLRIGLATADDIRRWSFGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
SCGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVIDVDEEGRHADMPGLENELRLELKTLGDQRDSRIADRMQRLEND
LAALEAEGAKADQKRRAKDVAEKEMSQIRKSIDEEIARLERVWDDFRNLKVGDLKPEDAV
FNELVDRYGLYFDAFMGAEAIKKRLETFDLAGEAESLRLEITEGKGAKKIRAIKRLKVVS
SFLNTGTSPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLSHAQNIKSAKRMVERSR
PQVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPTQDMIIGLHHLTTVKEGATGEGR
AFSSVSEAILAHDQHTLDLNAMARIRLNDVVFAEGEAPEGYTGGPVLVTTTLGQALFNEA
LPADYPYIQKVADKGTISGIVNDLAERYPKTVVAATLDNIKDAGFHWATRSGVTVALSDV
LTPPNKREIVAGYEKLAAKVQSEFEKGMITDNERRQELIKIWTDATAEVAEAMQKNFPAN
NTINRMVTSGARGNWLQVRNIAGMRGLVNNPKGEIIPRPIISSYREGLSVVEYFIATHGA
RKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTTKGLDLPIAAANAAGELVRDANV
ENSIYARSLAADAVDAKGNVIAKAGDDAGDVLIDTLIAAGIHEVKVRSVLTCESATGVCA
ACYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQGLPRVQEL
FEARTPKGASPIAETAGRITIEETDKSRKVILTPDNGDEAVIYPVLKRSTLLVSDGDHVE
LGQQLQVGTVDPKEVLRVQGVRAVQQHLVGGVQGVYRSQGVPIHDKHIEVIVRQMLRKVT
VVEHGDTELLPGELVDRSRYTEMNRAALTEGKKTASARQEVLGITKASLATESWLSAASF
QETTRVLTQAAMDGKSDPLVGLKENVIIGKLIPAGTGLAKYRNISVEATEEAKAERYPNR
IFAAEGDFTDADLSFVDFESFSSDDFSGNYN
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgcaaccgcttttgacaagcttcgtatcggtctggccactgctgacgacatc
cgtcgttggtcgttcggtgaggtcaagaagcccgaaaccatcaactaccgcaccctcaag
cctgagaaggacggcctctttggtgagcagatcttcggaccttctcgcgactgggaatgc
tcctgtggcaagtacaagcgtgtccgcttcaagggcatcgtttgtgagcgctgtggcgta
gaggtcaccaagtcgtccgtgcgccgtgagcgcatgggtcacattgagctggccgctccc
gttacccacatctggtacttcaagggcgttcctagccgcttgggttacctgctggacatg
gctcccaaggacctcgagaaggtcatctacttcgctgcctacatggtcatcgacgtagac
gaagagggtcgtcacgctgacatgcctggtctggagaacgagcttcgcctcgagctcaag
accctgggtgaccagcgcgactctcgcattgctgaccgcatgcagcgtctcgagaacgac
cttgcagctctcgaagctgaaggcgctaaggcagaccagaagcgtcgtgcgaaggacgta
gctgagaaggaaatgtctcagattcgtaagtccatcgacgaagaaatcgctcgcctcgag
cgcgtctgggatgacttccgcaacctcaaggttggcgacctcaagcctgaagacgctgtc
ttcaacgagctggtagaccgctatggcctgtacttcgacgctttcatgggtgctgaagca
atcaagaagcgtctggaaaccttcgacctcgcaggtgaagctgaatcgcttcgtctcgag
atcaccgagggcaagggtgcgaagaagattcgtgccatcaagcgcctcaaggttgtttcc
tccttcctcaacaccggcacctcgcctgcagcgatggttctcgatgttgttcccgttatc
ccaccagagcttcgccccatggttcagctcgacggtggacgctttgcgacctctgacctc
aacgacctttaccgtcgtgtgatcaaccgcaacaaccgtctccgtcgcctccttgacctc
ggtgctcccgagatcatcgtgaacaacgagaagcgcatgcttcaggaagctgttgacgca
ctgttcgacaacggtcgtcgtggtcgccccgttaccggtaccggtaaccgtgcgctcaag
tcgctgtccgacatgctcaagggtaagcagggtcgtttccgtcagaacctgctcggtaag
cgcgtggactactccggtcgttccgtcatcatcgtgggtcctcagctcaagctgcaccag
tgtggtctgcctaagcagatggcactcgagctgttcaagccattcgttatcaagcgtctg
atcgacctgagccacgctcagaacatcaagagcgcgaagcgcatggttgagcgtagccgt
ccccaggtgtgggatgttctcgaagagatcatccgcgagcgtccagttctgctgaaccgc
gcaccaactcttcaccgcctcggtattcaggcattcgaacctcagctcattgaaggtaag
gctattcagcttcaccctctcgtatgtgctgcgttcaacgctgacttcgacggtgaccag
atggctgttcaccttccgctctcggttgaggctcaggccgaagctcgcatcctgatgctt
gcttcgaacaacatcctcaagccttcggatggtcgccccgtgaccctgcctacgcaggac
atgatcattggtctgcaccacctcaccaccgtgaaggaaggtgctaccggtgaaggtcgc
gcattctcttccgtttctgaggcaatcctcgctcacgaccagcacacgctggacctcaac
gccatggcacgcattcgtctcaacgatgttgtcttcgctgagggtgaagcacctgagggt
tacaccggtggaccagttctcgtcaccaccactctgggtcaggcactgttcaacgaggct
ctgcccgctgactacccctacatccagaaggttgctgacaagggcaccatctccggcatc
gtcaacgaccttgctgagcgttaccccaagactgtggttgctgccacccttgacaacatc
aaggatgcaggtttccactgggctactcgctcgggtgtgaccgttgcactctccgacgtt
ctgactcctccaaacaagcgcgaaatcgttgctggttacgagaagttggctgcgaaggtt
cagtctgagttcgagaagggcatgatcactgacaacgaacgtcgtcaggaactgatcaag
atctggaccgacgccactgctgaagttgctgaagctatgcagaagaacttccctgcaaac
aacaccattaaccgcatggtcacctctggtgctcgtggtaactggctgcaggtccgcaac
attgcgggtatgcgtggtctggtgaacaacccgaagggtgaaattatccctcgtccgatc
atctcgtcgtaccgtgaaggtctctccgttgtggagtacttcatcgcgacccacggtgct
cgtaagggtctggctgacaccgctctgcgtactgcagactccggttacctcactcgtcgt
ctcgtcgacgtatcgcaggatgtcatcatccgcgaagaggactgtggcaccactaagggt
ctcgacctgcctatcgctgcagctaacgcagcaggtgagctcgtccgtgacgccaacgtg
gagaactccatctacgcacgtagcctcgctgctgacgcagtcgacgctaagggcaacgtc
atcgccaaggctggcgacgacgcaggtgacgttctgatcgacactctcatcgctgcgggc
atccacgaggtcaaggtccgttcggtcctgacctgtgagtctgcaaccggtgtatgtgct
gcctgctacggccgttcacttgctaccggcaagctcgtcgacatcggtgaagccgtcggt
atcatcgctgcacagtcgattggtgaacctggtactcagctcaccatgcgtaccttccac
actggtggttccgcatctgctgatgacatcacccagggtctgccccgtgttcaggagctc
ttcgaagcacgtacccctaagggtgcatcgcctatcgctgagactgctggtcgcatcacc
atcgaagaaaccgacaagagccgtaaggtaatcctcacccccgacaacggtgacgaggca
gttatctaccccgtgctcaagcgttcgactctcctcgtatctgatggagaccacgttgaa
ctcggtcagcagctccaggttggaaccgttgaccccaaggaagttctgcgagtacagggc
gttcgcgccgtacagcagcacctcgttggtggcgtgcagggcgtttaccgctcgcagggt
gtacctatccacgacaagcacattgaggtcatcgttcgtcagatgctccgcaaggtaact
gttgttgagcacggtgacaccgaactcctcccaggtgagctcgttgatcgttctcgttac
accgagatgaaccgcgctgctctcacagaaggtaagaagactgcttcggctcgtcaggaa
gttcttggtattaccaaggcttcgctggctaccgagtcatggctgtcggctgcctccttc
caggagaccacgcgtgttctcacccaggctgcgatggacggcaagtccgatcctctcgtc
ggcctcaaggagaacgtcatcatcggtaagctcatccccgccggaaccggtcttgcgaag
taccgcaacatctcggttgaggcgacggaagaagctaaggctgaacgctaccccaaccgc
atcttcgcggctgaaggtgacttcaccgacgctgacctgagctttgtcgatttcgagtct
ttctcgtcggatgacttctcgggtaactacaactaa
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