Aurantimicrobium photophilum: AURMO_00608
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Entry
AURMO_00608 CDS
T05480
Name
(GenBank) Putative ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
aum
Aurantimicrobium photophilum
Pathway
aum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AURMO_00608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aum03019
]
AURMO_00608
Messenger RNA biogenesis [BR:
aum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AURMO_00608
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AWR21219
UniProt:
A0A2Z3RWR1
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All DBs
Position
584945..586621
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AA seq
558 aa
AA seq
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MPNELFDPPALEHGTLRVVPLGGVGEIGRNMTVYELNGKLLVVDCGVLFPEETQPGVDLI
LPDFSYIRDRMDDVLAIVLTHGHEDHIGAVPYLLRLKNDIPLVGSGLTLALIEAKLKEHR
IQPYTLQVKEGDKEQFGPYELEFVAVNHSIPDALAVAIRSEAGLVLHTGDFKMDQLPLDG
RLTDLRAFARLGEEGVDLFLPDSTNADVPGFTPLERDIGPVLESVIHRSKRRVIVASFSS
HVHRVQQVIDAAVANNRHVVLMGRSMVRNMGIAAELGYLEVPEGTIIDAKKAAELPDDRL
VYMSTGSQGEPMAVLARMANLEHQIEVGPGDTVILASSLIPGNENAVFRVIDGLTKLGAK
VVHKGNAKVHVSGHAAAGELLYCYNILQPKNVFPVHGEYRHLVANANLAIDSGVDAHRTI
LGEDGTVIDLKGGIARVVGQLDIGYVYVDGSSVGEITDNDLKDRRILAEEGFISIIVVVD
PATGKIIVGPEIHAKGFAEDDAVFDEIKPAIAKALQEAAHNGVRDAHSLQQVIRRTVGQW
VSKSYRRRPMIIPLVIEA
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcctaacgaactgtttgacccacctgcactagaacacggaacgctgcgcgttgtccca
ctcggaggagtgggggagattggtcgcaacatgaccgtctatgaactcaacggcaagctc
cttgtcgtggactgtggtgttcttttccctgaagagactcagcctggtgtggacctcatc
cttcctgacttcagctacatccgtgaccgcatggatgacgttctggccatcgtgctcaca
cacggtcacgaagaccacattggtgctgtcccgtatctgcttcgtttgaagaatgacatt
cctctggtgggctcaggactgaccttggcactcattgaagccaagctcaaagagcaccgg
attcagccctacaccttgcaggtcaaggaaggcgataaggaacagttcggtccctacgag
ctcgagttcgttgctgtgaaccactccattcctgatgcgttagctgtggccattcgctct
gaagcaggtcttgttttgcacactggtgacttcaagatggaccagcttcctctcgatggt
cgcctcaccgatctgcgtgctttcgcacgcctcggcgaagaaggtgtggatctgttcctg
cccgactccaccaacgctgacgttcctggattcactccacttgagcgtgacattgggcct
gtgttggagagcgtgattcaccgttctaagcgccgagttattgtggcgagcttctcgtca
cacgtgcaccgcgtgcagcaggttattgatgcggcagtggccaacaaccgccacgtagtt
ctgatgggccgttccatggtgcgcaacatgggcatcgcggcagagctgggctacctcgag
gttccagagggaaccatcattgatgccaagaaggcagcagagctgcctgatgatcgtctg
gtttatatgtcgactggctctcaaggtgagcccatggctgtgcttgcccgcatggctaac
ctcgagcaccaaattgaggtcggtcctggtgacaccgtgattctggcatcaagcttgatt
cccggaaatgagaacgccgtcttccgcgtgattgatggactcaccaagttgggtgccaag
gtcgtacacaagggcaacgccaaggtgcacgtctctgggcacgcagcggcaggggagttg
ctctactgctacaacatcttgcagcccaagaatgtgttcccggtgcacggcgaataccgt
cacttggtagcgaacgccaacctggcgattgattcaggcgttgatgcacaccgcaccatc
ctgggtgaagacggaactgtcattgatctcaagggtggaattgcccgcgtagtcggccag
ctcgatattggctacgtctatgtggatggctccagtgtgggtgagatcacagataacgat
ctcaaggaccgtcgcatcctcgccgaggaaggcttcatctccatcatcgtggtcgtggat
cctgccaccggcaagatcattgtcggacctgagattcacgccaagggtttcgccgaagac
gatgcggtgtttgatgagattaagccagctattgccaaggctcttcaggaagcagctcac
aatggcgttcgtgacgcgcattccctgcagcaggtcattcgtcgcacggtggggcagtgg
gtctcgaagagctaccgtcgtcgtccgatgattattcccttggtgatcgaagcctaa
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