Aurantimicrobium photophilum: AURMO_01341
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Entry
AURMO_01341 CDS
T05480
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aum
Aurantimicrobium photophilum
Pathway
aum03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AURMO_01341
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aum03400
]
AURMO_01341
Enzymes [BR:
aum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AURMO_01341
DNA repair and recombination proteins [BR:
aum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AURMO_01341
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AWR21932
UniProt:
A0A2Z3S7I7
LinkDB
All DBs
Position
complement(1320418..1324011)
Genome browser
AA seq
1197 aa
AA seq
DB search
MVFQGLSRALSRTPNIAEALSYANKDADFSVVEGLNAPLLSALIDARISAGLPPAVMAVT
ATNREAERLAAALSSLMPHAQLCDFPAWETLPHERLSPSPEIVGRRFEALRQMRDWDGSH
PLVLITSVRGALQPIADNLGDVEPIALSVGSRGNDLMAIAAQLVDLAYVRVDMVTRRGEF
AVRGGILDVFPPVADHPIRVDFFGDEVDSIRAFSVADQRSLDGDIPNIALPPSRELLLTA
PVRQRAREMEHEFPGINQMLSKIAEGIAVEGMESLTPALVDRLVPITNYLPQGAAVALLS
PERIATRAINLTETNREFLHAAWNAASAGAQSPIDLSAGDFLTVTELRTHYSGGAWWTFS
AFQHGPDASEPLPEELDLDEILAIRIHAKAVPTFAGNVDGAVDHVEALLKQDWTVIVAAE
GHGLVERAGQVLSERNLAARMVAELPGELEPAVAYLVQASVEAGFELEEAKLAVISEAEF
YGRAAGYDARAPRKLASRRKNVVDPLKLEAGDIVVHETHGIGKFLELVQREVSSGGRNAV
KTTREYLVIEYAPSKRGYPGDKLYVPTDQLDQLTRYVGGEAPALSKMGGSDWGQAKSKAR
KAVRDIAVELVKLYSARMASRGFSFSPDTPWQRELEEAFPYVETVDQLTTIDEVKADMER
AIPMDRLISGDVGFGKTEIAVRAAFKAVQDGKQVAILVPTTLLVKQHFETFQERFAGFPV
HLRALSRFQTDKEAKETLAGMADGTVDVVIGTHRLLAQGVTFKDLGLVIIDEEQRFGVEH
KDALKKLKTNVDILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILTFVGPYSEKQA
AAAIRREILREGQVFFVHNRVSSINRVAAQIAELVPEARVGVAHGQLTEHQLEQVIIDFW
ERKFDVLVSTTIIETGLDIANANTLIVDRADKYGLSQLHQLRGRVGRGRERAYAYLFYDE
TTPLSETAHDRLNALAMNNELGSGIQIALKDLEIRGAGNLLGGEQSGHIAGVGFDLYLRM
IGEAVSAFRGDVAEGQTELRLELPVDARIPEDYVDSERLRLEAYQKLSVASGPLSRDEQI
DQVLEELTDRYGEPPAQVHNLISISRLRRRAHKSSLSEVVVMGSNLRITPADLPDSIQVR
LARMYPGAKYVPAARVITVPLPEDADLIAWTGNLLDAIFPIAKPEVSAASDSGENAS
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atggtatttcaggggctttcgcgcgccctttcgcgcaccccaaatatcgccgaagctctc
agctacgccaacaaagatgctgatttctctgtcgttgaaggcctcaatgccccgcttctc
tcggcactgattgacgcacgtatctcggcaggactgccacctgcggtaatggcggtcacc
gccactaaccgcgaagcagaacgtctggccgctgcactctcaagcttgatgccccatgcc
cagctctgtgacttcccagcgtgggaaacgcttcctcatgagcgcttgtcacccagccct
gaaatcgtcggtcgccgtttcgaagcgcttcgccagatgcgtgactgggatggctcccac
cctcttgtcttgatcacttctgttcgcggtgctctgcagcccattgctgacaacctcgga
gacgtggaacccattgcgctcagcgtgggcagcaggggcaatgacctgatggccattgcg
gcccagctggttgacctcgcctatgtgcgcgtcgacatggtcacccgccgtggagagttt
gccgtccgcggtggcatcttggatgtgttcccacctgttgccgaccaccccattcgtgtg
gacttcttcggtgatgaagtggattccattcgtgccttctccgtagcggaccagcgatcg
ctggacggtgacattccgaacattgctttgccaccgagccgtgaacttctcctgaccgca
ccggttcgtcagcgtgcacgtgaaatggaacacgagttcccgggtattaaccagatgctt
tccaagattgccgaaggtattgccgtggagggtatggagtcgttgactcctgcactcgtg
gatcgcctggttcccatcacgaactaccttcctcaaggcgctgcggttgcgctgctttct
cctgagcgcattgccacgcgtgcgattaacctcactgagaccaaccgagaattcctgcat
gcggcatggaatgccgccagtgctggagcacagtcaccgattgacctctctgccggtgac
ttcctcaccgtgacagaactgcgcacacattattccggtggtgcttggtggacattcagt
gcattccagcacggacctgatgcctccgaaccactgccggaagaactcgatctcgatgag
atcctggcgattcgcatccacgccaaagctgtgcccacgtttgcgggcaatgtggatggt
gctgttgatcacgtggaggctctgctcaaacaggactggaccgtcattgtggcggccgaa
ggccacggtcttgttgaacgagcaggacaggttctttcagaacgtaaccttgctgcgcgc
atggtcgcggagcttcctggcgagctcgaacctgctgtggcatatctcgttcaggcttcc
gtcgaggcaggcttcgagctcgaggaagccaagctagccgttatctctgaggctgagttc
tatggccgtgctgccggttatgacgcccgggcaccacgcaagttggccagtcgtcgcaag
aatgtggtggacccactcaagcttgaagcaggcgacatcgtcgtccacgaaactcacggt
attggcaagttcctcgagctcgttcagcgtgaagtgtcctccggtggtcgcaatgcggtg
aagaccacccgtgaatacctcgtcattgaatacgcccccagcaagcgcggctatcccggc
gacaaactctatgtccccaccgatcagctcgaccagctcacgcggtatgtgggcggggaa
gcacctgcgctgtccaagatgggtggcagtgactggggccaggccaagagcaaagctcgc
aaggcagttcgtgacatcgccgttgaactggtcaagctctatagcgcgcgcatggctagc
cgtggattctccttcagtcccgatactccctggcagcgcgaactcgaagaagccttcccc
tatgtggagaccgtagatcagctcaccacgatcgatgaagtcaaagcagacatggagcga
gccatcccgatggatcgccttatctcgggtgatgtgggcttcggtaaaacagagatcgcg
gttcgcgccgcgtttaaggctgtccaagatggcaagcaagtagccatcttggtgcccacc
acgctgctggtgaagcaacactttgagaccttccaagaacgcttcgcgggattccctgtt
cacttgcgagctctcagccgcttccaaacggataaggaagccaaggaaaccttggcaggc
atggctgatggcaccgtggacgtggtcattggaacccaccgtctcttggcgcaaggcgtc
acgttcaaagacttagggctcgtcatcatcgatgaagagcagcgctttggtgtggagcac
aaggatgcgctgaagaagctcaagaccaatgtcgacatcctggccatgagtgccacgccc
atccctcgcacgcttgagatggccgtcaccggcattcgagaaatgtctaccctggccacc
ccgccagaagatcgccaccccatcctcaccttcgtgggtccctattcagagaagcaggca
gctgccgctattcgtcgcgagattctgcgtgaaggtcaggtgttcttcgttcacaaccgt
gtctccagcatcaaccgggttgctgcgcagattgcagagctcgttcccgaagcacgcgtg
ggtgttgctcacggtcagctcactgagcaccagcttgagcaagtcattatcgacttctgg
gaacgcaagtttgacgtgttggtctccaccaccatcatcgagaccggtcttgacattgcc
aatgccaacaccttgattgtggacagggcagataagtatggactgagccaactccaccag
cttcgtggtcgcgtgggccgtgggcgcgaacgcgcctatgcctatctcttctatgacgag
accacgccactgagcgaaacagctcacgatcgtctcaacgcgctcgcgatgaataacgag
ctgggctcgggtattcagattgcgctcaaagaccttgagattcgtggagcaggaaaccta
ctcggcggggaacagtctggccacatcgctggcgtgggctttgacctctacctgcgcatg
attggcgaagccgtctcagccttccgcggcgatgtcgccgaaggccagaccgagctccgc
ctcgagcttcctgtcgatgcgcgtatccctgaggactatgtcgatagtgagcgactgcgc
cttgaggcttaccaaaaactctcagttgccagcggcccactctctcgtgacgagcagatt
gatcaggtcttggaagaactcaccgaccgctatggtgagcctcctgctcaggtgcacaac
ctcatctccatctcgcgcctgcgcagacgagcacacaagtccagtctgagcgaagttgtc
gtgatgggctccaacctgcgcattactcccgcagacctccctgattcgattcaggtgaga
ctggcgagaatgtatccgggagcgaagtatgttccagctgctcgggttattacggtgccc
ctgccagaagatgcggatctcattgcctggaccggcaatctactcgatgccatcttcccg
atagcaaaacctgaagttagtgctgcttccgatagtggtgagaacgccagctaa
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