Aerococcus urinae: AWM73_07070
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Entry
AWM73_07070 CDS
T04528
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aun
Aerococcus urinae
Pathway
aun03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AWM73_07070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aun03400
]
AWM73_07070
Enzymes [BR:
aun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AWM73_07070
DNA repair and recombination proteins [BR:
aun03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AWM73_07070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
IstB_IS21
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AMB96278
UniProt:
A0A120I9X2
LinkDB
All DBs
Position
complement(1548603..1552172)
Genome browser
AA seq
1189 aa
AA seq
DB search
MEMNLENYLNEKIIDSKLKNTLRTGQSVLYLGLQAASKAYMIAEIQASHPDKKTVVLTNN
LLQAERFYEDLQTFNPEADLHLYSSPESVAEDLAIQSPEALGDRLATLDWLLDEDSSGIL
ISPIFGLKRALTPVSEWKHLVKNIQRGQELAVDQLKADLLLLGYERVEAVLRPGEMSVRG
DIVDLFPLTSPQPLRLSLAFDEVDRITTFDVNSQKSQDDLEAVTILPAKDLLFSPARLKA
GVAHLEKVAQEKAEKIQDEAIKKQVQAIFQDEIQAWSAGETTERTHYFSQILYPDSCSLL
DYVGQGQTLVLDDMTRLIELSQEIDQRAALYLQGKVEAGHLPPIDQIYLDSHDQVMAYSG
RKFYLAQWQKGYGNMRFDGLYQFQTRTVTPFYHNKEAIKLEFEAWLRMGRSLLIFIEEED
KARDLEKELKAMDFQAVLTQADQIIPEAINIIAGHLSGGIEFVDSQVVLLAQSDLFDQAK
RRRRKNTNNLSNAERLKNYQELKPGDYVVHVNHGIGQFVGVETIEVAGNHKDYLSIVYAD
NASIHVPIDQIDLVQKYVSAEGKIPKLNKMGGTEWQKTKQRVSKKIEDIADDLVDLYAER
ETRKGYAFSPDNEDQAAFEDEFPYPETDDQLRSIQEIKADMEKEKPMDRLLVGDVGFGKT
EVAMRAAFKAMLDGKQVAFLVPTTVLAQQHYETMLERFKDYPFTIDLLSRFRSPAEQKHV
IKCLKEGSVQLVIGTHRLLSKDIKFLDLGLLVVDEEQRFGVKAKERLKALRKNVDVLTLT
ATPIPRTLNMSMMGVRDLSVIETPPANRFPVQTYVMEQNYGAIRDAIERELARNGQVFYL
FNNVQNIQEKANFIEELVPQARVAIAHGQMHANQLEEVLMDFLAGDDDVLVTTTIIETGI
DMPNVNTLLVEDADRMGLSTLYQLRGRVGRSNRVAYAYFMYRPDKALNEASEKRLTALKD
FTELGAGFKIAMRDLSIRGAGNLLGQEQHGFVNSVGYDLFQQMLDEAIRKKQGKAAKRPQ
SPTEIELHIDAYIPSEYIQDENQKVEIYKRINLLDDVDTMWDLDDELLDRFGEPPVEVQW
LLAVGTMKSYATAIGVEKITRKGKAIELVFTKQQDPSQLTPLIFQALEDIPMKLQIKMAN
DQLVMQLNTKDLSTDQWLDYLLQFLTQLSKDLQVDSDQVDGRQTRDGVE
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
gtggaaatgaacttagaaaattatctcaatgagaaaattattgacagcaagctaaaaaac
accttgaggacggggcagagtgttctctacctgggtttacaggcggctagtaaggcctat
atgattgctgaaattcaagccagccatcccgataaaaagaccgtggtcttgaccaataac
ctcttgcaggcagagcgtttttatgaagacctgcaaaccttcaatccagaagctgacctc
cacctctattccagtccagaaagtgtggctgaagacttagccattcaaagcccggaagct
ctgggggaccgcttggcaaccttagactggttacttgatgaagatagtagcgggatctta
attagtcctatcttcgggttaaagcgtgccctgactcctgtatctgagtggaaacaccta
gttaaaaacatccaacggggccaagagctggcagtcgaccagttgaaagcagacttattg
cttttggggtacgaacgggtggaggccgttttacgacctggtgaaatgagtgtccgtggg
gatattgttgacctcttcccactaactagtccccagcccttacgactgtctttggccttc
gatgaagtagaccgcatcacgacttttgatgttaacagccaaaagagccaagacgactta
gaagcagtcaccatcttaccggctaaagacctcttgtttagccctgcccgcctaaaagct
ggtgtggctcatttagaaaaagtggcccaggagaaagctgaaaaaatccaagatgaagcc
atcaaaaaacaagtccaagccatcttccaggatgaaatccaagcctggtcagctggggag
acgaccgaacgtacccattattttagtcagatcctctatccagactcttgcagcctgctt
gactatgtggggcagggacagaccctagtgctagatgatatgacccggctgattgaatta
tcccaggaaattgaccagcgagccgccctttatctgcaagggaaggtggaagctggccac
ctgcctccgattgaccagatctatttagatagtcacgaccaagtgatggcttattcagga
cggaagttctacctggcccagtggcagaagggttacggcaatatgcgctttgatggtctc
taccaattccaaacgcggacggtgacacctttttaccataataaggaagctattaaactg
gaatttgaagcctggctgagaatgggccggtctttactgatctttatcgaggaggaagat
aaagcccgcgacttagaaaaagagctcaaagccatggacttccaggcggtcttgacccag
gcagatcaaattattcctgaggctattaatattattgctggtcacttgtcgggaggaatt
gaatttgttgacagtcaagtggtccttttagcccaaagtgacctttttgaccaggccaag
cgtcgtcgtcgtaaaaataccaataacctctctaacgctgagcgcttaaagaactaccaa
gagttaaaacccggcgactatgtggtccatgttaaccacggaattggtcagttcgttggg
gtagagaccatcgaggtagcaggaaaccacaaggactatctcagcatcgtctatgccgat
aatgcctctatccacgtccccatcgaccaaattgacttggtccaaaaatatgtttcagca
gagggcaagatccctaaactcaacaaaatgggcggaaccgaatggcaaaagaccaagcaa
agggtcagcaagaaaattgaagatattgctgatgacttggtggacttgtatgcagaaagg
gagaccagaaagggctatgcctttagtcctgacaatgaggaccaggctgcctttgaagat
gaatttccttatcctgaaaccgatgaccagctccgctcaatccaggaaattaaagccgac
atggaaaaagaaaagcccatggatcgtctccttgttggggacgtgggctttggaaagact
gaagttgctatgcgggctgcctttaaggctatgctagatggtaagcaagtcgccttcctg
gtgccaacgactgtcttagcccagcaacactacgaaaccatgctagagcgctttaaggac
tatccctttactattgacttattgagccgtttccggagcccggccgaacaaaagcatgtc
attaagtgcttaaaagagggcagcgtccaattagtgatcggtacccaccgactcttatcc
aaggacattaagttcttagatctcggtttattggttgttgatgaggaacaacgctttggg
gttaaggccaaggagaggttgaaggccttgcggaaaaatgtcgatgtccttaccctaacg
gcaacaccgatccctcgtaccttgaatatgtccatgatgggggtcagggacttgagtgtg
attgaaacaccaccagctaatcgttttccggtacagacctatgtcatggaacaaaactat
ggggccatccgggatgctattgaacgggagttagcccgcaatggccaagtcttttacctc
tttaataatgtgcaaaatatccaagaaaaagccaacttcattgaggaattagtcccccaa
gcccgggtagcgattgcccatggccagatgcatgctaatcaattagaggaagtcttaatg
gatttcttggccggagatgacgatgtcttagtcactaccaccattattgaaaccgggatt
gatatgcctaatgtcaatactctcttggtggaggacgcagaccggatgggcttatcgacc
ctctatcaattacggggccgggtaggccggtccaaccgggtagcctatgcttactttatg
taccggcctgacaaggccttaaatgaggccagcgaaaaacggctgaccgccctcaaagac
tttactgaattaggggcagggttcaaaatcgccatgcgcgacctctccattcggggagcc
ggcaacctcctggggcaagaacagcacggttttgtcaattcggtgggttatgacctcttt
caacagatgctggatgaagccatccgtaagaaacaaggcaaggcagctaagcggcctcag
tcacccacagaaattgaattgcacattgatgcttatattccttcagaatatatccaggat
gaaaatcaaaaggtggaaatctacaaacgcatcaacctgctggacgatgtcgataccatg
tgggacttggatgacgaattgttggatcgctttggtgagcctccggtagaggtccaatgg
ctcttagcagttgggacaatgaagtcttatgctactgcaataggggtagagaaaatcacg
cgtaaggggaaggcgattgagctggtctttaccaagcaacaagaccctagccaattgact
ccgctcattttccaggccttagaagacatcccaatgaaattacaaatcaaaatggctaat
gaccaattagtcatgcagttaaacactaaagacctctcaaccgatcagtggctagactat
ctccttcaatttctaacccagctcagtaaggatttacaggtagattctgaccaagtggat
gggaggcagactagagatggtgtcgagtaa
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integrated database retrieval system
