Actinomyces urogenitalis: R3I39_01950
Help
Entry
R3I39_01950 CDS
T09523
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
auo
Actinomyces urogenitalis
Brite
KEGG Orthology (KO) [BR:
auo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
auo03032
]
R3I39_01950 (topA)
03400 DNA repair and recombination proteins [BR:
auo03400
]
R3I39_01950 (topA)
Enzymes [BR:
auo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
R3I39_01950 (topA)
DNA replication proteins [BR:
auo03032
]
Prokaryotic type
DNA Topoisomerases
R3I39_01950 (topA)
DNA repair and recombination proteins [BR:
auo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
R3I39_01950 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
WOO95583
LinkDB
All DBs
Position
complement(458192..460984)
Genome browser
AA seq
930 aa
AA seq
DB search
MSKKLVIVESPNKVRSIAGYLGSDFDVEASVGHIRDLAQPSELPAAEKKGPYGKFAVDVE
HGFKPYYVVNPDKKKTVAQLKKALKDADELYLATDDDREGEAIAWHLLEVLKPKVPVKRM
TFTEITKEAVTRALESTRELDTDRVDAQETRRILDRLVGYEVSPVLWRKVRAGLSAGRVQ
SVATRLVVERERERMAFKAAGYWGVEAELGTTGSLEESGRTFTARLATLDGRRVATGRDF
GDDGALRPAAVKAHTVHLHEGGARAVADAVMASAPTVTEMETKPYKRRPAAPFTTSTLQQ
EASRKLRMNPRETMRVAQGLYENGYITYMRTDSTVLSGQAVAAARAQVAELYGAQYVPAK
PRLYATKTKGAQEAHEAIRPAGDHFRTPAQVAGALSGAQFRLYELIWKRTVASQMADAVG
QTATVKVEVPLKEAKGGARDSGVTFRTAGFTASGTVITFRGFLAAYEEGRDAERYEAEPG
KAGAASAGEVRLPAMEVGDVLDAKVAEASGHETTPPPRYTEASLVKALEEREIGRPSTYA
ATMSTIADRGYVEHRGQALVPTWLAFAVTRLLEENFSELVDYDFTASMEADLDRIAAGEE
DRVAWLTRFYYGDGDGQGAQPGEGPEQGLKAMLDNLGEIDARAVNSIEIGEGITLRVGRY
GPYLEDEEGKRANVPADVAPDELTVAKAKELFERAADDGRELGVDPSTGHVIIAKDGRYG
PYVTEVLPEPEGTQEPQDEAAPKKRTSKAKTGPKPRTASLFKSMGLSTVTLEQALDLLSL
PRVVGQDAEGVDITAQNGRYGPYLKKGTDSRSLESEEQLFTVTLEQALEIFAQPKRRRGQ
AAPKAPLRELGTDPVSGRPVVIKDGRFGPYFTDGETNVTLRRGDDPATVTPERAYELLAE
KRAKGPAKKRTTRKTTAKKTTTKRKTSARG
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
gtgtccaagaagctcgtcatcgtcgagtcgccgaacaaggtccgctcgatcgcggggtac
ctcggctcggactttgacgtcgaggcctccgtcgggcacatccgcgacctggcccagccc
tctgagctcccggcggcagagaagaaggggccgtacggcaagttcgccgtcgatgtcgag
cacggtttcaagccctactacgtggtcaacccggacaagaagaagaccgtcgcccagctg
aagaaggcgctcaaggacgctgacgagctctacctcgctaccgatgatgaccgcgaggga
gaggcgatcgcctggcacctgctggaagtcctcaaacccaaggtccccgtcaagcgcatg
accttcacggagatcaccaaggaggcggtcacccgagccctggagtccacccgtgagctg
gacacggaccgggtcgatgcccaggagactcgccgcatcctcgatcgcctcgtcggctac
gaggtctcgccggtgctgtggcgcaaggtgcgcgcgggcctgtcggccgggcgcgtgcag
tcggtggccacccgtctggtggtcgagcgcgagcgcgagcgcatggccttcaaggcggcc
ggctactggggcgtggaggccgagctggggaccaccggctcgctggaggagtccggacgc
accttcaccgcacggctggctaccctcgacggccgccgcgtggctacgggacgtgacttt
ggtgacgacggcgccctgcgcccggccgccgtcaaggctcacaccgtccacctccacgag
ggcggggcccgcgccgtcgccgacgccgtcatggcctcggccccgaccgtgaccgagatg
gagaccaagccctacaagcgccgcccggcggcgcccttcaccacctccaccctccagcag
gaggcctcgcgcaagctgcggatgaacccgcgcgagaccatgcgggtggctcagggcctg
tacgagaacggctacatcacctacatgcgtacggactccacggtgctgtccggccaggcc
gtggcggccgctcgcgcgcaggtggccgagctctatggagcgcagtacgtgccggccaag
ccacgcctgtacgccaccaagaccaagggtgcgcaggaggctcacgaggccatccgcccg
gccggagaccacttccgcactccggcccaggtggccggtgcgctctccggcgcccagttc
cgcctctacgagctcatctggaagcgcaccgtggcctcgcagatggccgacgccgtcggc
cagaccgccacggtcaaggtggaggtcccgctcaaggaggccaagggtggggcccgggac
tccggcgtcaccttccgtacggccggcttcacggcgtcgggcacggtcatcaccttccgt
ggcttcctggccgcctacgaggagggccgggacgctgagcgctacgaggccgagccgggc
aaggcgggcgcggcaagcgccggtgaggtacgcctgccggctatggaggtcggggacgtc
ctggacgccaaggtggccgaggcctctggccacgagacgacgccgcctccgcgctacacc
gaggcgagcctggtcaaggccctggaggagcgggagatcggacgcccctcgacctacgcg
gcgacgatgtccaccatcgctgaccgcggttacgtcgagcaccggggccaggcactggta
cccacctggcttgccttcgccgtcacccggctgctggaggagaacttctccgagctggtt
gactacgacttcacggcctcgatggaggcggatctggaccgtatcgccgccggcgaggag
gaccgggtggcgtggctgacccgcttctactacggggacggcgacggccagggagcgcag
ccgggcgaggggcccgagcagggcctgaaggccatgctggacaacctcggcgagatcgac
gcccgcgccgtcaactccattgagatcggtgagggcatcacgctgcgggtggggcgctac
gggccctacctggaggatgaggagggcaagcgggccaacgtcccggccgacgtcgccccg
gacgagctgacggtggccaaggccaaggagctgttcgagcgcgcggctgacgacgggcgc
gagctgggcgtggacccctccaccgggcacgtcatcatcgccaaggacgggcgttacggt
ccctacgtcaccgaggttctgccggagccggagggcacgcaggagccgcaggacgaggct
gcgccgaagaagcggacgagcaaggccaagacgggcccgaagccccggacggcctccttg
ttcaagagcatgggcctgtccacggtgacgctggagcaggcgctggacctgctcagcctg
ccgcgggtggtgggccaggacgccgagggcgtggacatcaccgcccagaacggccgctac
gggccctacctgaagaagggtacggactcccgctccctggagagtgaggagcagctgttc
accgtgacgctggagcaggctctggagatcttcgcccagcccaagcgccggcgtggtcag
gcggctcccaaggctccgctgcgtgagctgggcacggacccggtctcggggcgtcccgtg
gtgatcaaggacggccgcttcggtccctacttcacggacggggagaccaacgtgacgctg
cgtcgcggtgacgacccggccacggtcaccccggagcgggcgtatgagctcctggcggag
aagcgggccaaggggccggccaagaagcgcaccacccgcaagacgacggcgaagaagacg
acgacgaagaggaagacctccgctcgcggatga
DBGET
integrated database retrieval system
