Actinomyces urogenitalis: R3I39_02315
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Entry
R3I39_02315 CDS
T09523
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
auo
Actinomyces urogenitalis
Brite
KEGG Orthology (KO) [BR:
auo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
auo03019
]
R3I39_02315 (hrpB)
Enzymes [BR:
auo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
R3I39_02315 (hrpB)
Messenger RNA biogenesis [BR:
auo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
R3I39_02315 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_22
AAA_25
AAA_11
AAA_19
CON_HrpB
AAA_16
NTPase_1
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
WOO95649
LinkDB
All DBs
Position
531078..533798
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AA seq
906 aa
AA seq
DB search
MSSTPSGPPSDPIALLLADPPQLPMMAGLPRLRELLTAEATTPPQGACVVVTAPPGTGKT
TLVPPLVADVVAHRSAGHAPGAASQPGRVLVTQPRRVATRAAARRLASLLGEEIGQSVGY
AVRGDRQVGPATRIEVVTAGLALRRLQAEPDLPGVDAVILDEVHERSIEGDLLLTLLLDA
RALREDLTLVAMSATLDLARLPQMLGSQGTPAPVLDVPSALHPLQERWAPPPAGVSRLAA
HGVAREFLAHVASTTLQALEGSGDVLVFLPGAREVDDVVARLRSQVPPGVDVLPLHGRLG
AAAQDAALAPSSPGRRRVVVATNVAESSLTVPGVRIVVDATLAREPRVDVASGMSGLVTV
GESRAEGIQRGGRAGREGPGVVVRCCTQVDWARAPQAPTPEILSSDLTRTALELAVWGAP
GGRGLIWLDAPPEPAMAVASQALSELGLIDEAGSVTALGRAVAAVPAPVREARALLLAAE
VVGQHRAAQATALLTAGLRAPGGDLTALARSVRAGGDGARSWHEEARRLERAAAHGRTLG
GGEALAAAVAEVASRTSQALGQAPTASVDAVGLVAALAHPQWIACRRGPLPAAGQEARYV
GVGGVGMRVAAGSPLAASQWLAVAEVDRAPGRAEALVRGGAPVDEELALAVAARWLTERE
EVSWEQDRLRARRVRGLGAITLSQTPLSVPSAQAVARAVVERGSEEGLDFLPWEVGEHPA
GVLRARLALLHRVLGEPWPAVDDASLLARAEEWLVPAVRATAGAGRRFEVGRLDLTTALR
TLLPWPQAARLDELAPERLTVPSGSQVRLSYLGEQGEMLERPVLAVRVQECFGWASTPRV
ADSRVGVLLHLLSPARRPVAVTDDLRSFWEGPYQQVRRELRGRYPKHSWPEDPWTAPAIR
GTKRRG
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
gtgagcagcacgccgtccggacctccctccgaccccatcgccctcctgctggccgacccg
ccgcagcttccgatgatggctggcctgccgcgcctgcgtgagctgctcaccgctgaggcg
acgacgccgccgcagggcgcgtgcgtcgtcgtcaccgccccgccagggacgggaaagacc
accctcgtgccgccgctcgtggccgacgtcgtcgcacaccgcagcgcagggcacgccccg
ggcgccgcctcccagcccggccgcgtcctggtcacccagcccaggcgagtcgcgacccgg
gccgcggctcggcgcctagccagcctgctcggcgaggagatcggccagagtgtgggttac
gccgtgcgcggggaccggcaggtcggccccgccacacgcatcgaggtggtgaccgcaggc
ctggcactgcgccgtctgcaggctgagcctgacctgccgggtgtcgacgccgtcatcctc
gacgaggtccacgagcgctccatcgagggcgacctcttgctcaccctgctgctggacgcg
cgagccctgcgcgaggacctcacgctcgtcgccatgtccgcgaccctggaccttgcgcgc
ctgccgcagatgctgggcagccagggcacgccggccccggtcctcgacgtcccctctgcc
ctgcacccgctccaggagcggtgggcgcccccgcccgcaggcgtgtccaggctcgccgcc
cacggcgttgcgcgcgagttcctcgcccacgtcgcctccaccacgctccaggcgctggag
ggttccggggacgtcctggtcttccttcccggggcccgggaggtcgacgacgtcgtcgcc
cgcctgcgcagccaggtgccgcccggcgtggacgtcctgccgctgcacggccgcctgggg
gctgcggcgcaggacgcggccctggccccctcgtctcctggccggcgacgcgtcgtcgtg
gcgacgaacgtcgccgagtcctcgctgaccgtgccgggcgtgcggatcgtcgtcgacgcc
acgctggcacgtgagcctcgcgtggacgtggcctctgggatgtccggcctggtgaccgtc
ggcgagtcccgggcggaggggatccagcgcggcgggcgtgccgggcgcgaggggccgggc
gtcgtcgtgcgctgctgcacgcaggtggactgggcccgcgcgccccaggcgccgacgccc
gagatcctgtcctcggacctgacccgcacggcgctggagctggcggtgtggggcgccccg
ggtgggcgcggcctgatctggctcgatgccccgcccgagcctgcgatggcggtggcctca
caggccctgagcgagttgggcctgatcgatgaggctggcagcgtgacggcgctgggacgt
gcggtcgcggcggttcccgctccggtccgtgaggctcgcgcgctgctcctggcggccgag
gttgtggggcagcaccgggcagcacaggcgacggcgctgctgaccgcagggctgcgcgct
cccggtggcgacctcacggccttggctcgctcggtacgcgcgggtggggacggcgcgcgc
tcctggcacgaggaggcccggcgtctggagcgtgccgcggcccacggccgcacgttgggc
ggaggcgaggccctcgccgcggccgtcgctgaggtggcatcccgcacgagtcaggccctt
ggccaggcgccgaccgcgagcgtggacgccgtcggcctggtcgcggccctggctcatccg
cagtggatcgcctgccgccgtggtcccctgcctgcagccggtcaggaggcgaggtacgtc
ggggtcggaggtgtggggatgcgcgtggcagcaggctcccctctggcagcctcccagtgg
ctggcggtggctgaggttgaccgcgcgcctggacgcgccgaggcgctggtacgtggtggc
gcccctgttgacgaggagctggcgctcgccgtggctgccaggtggctgaccgagcgcgag
gaggtcagctgggagcaggaccggctgcgagcccgccgggtccgtggcctgggcgcgatc
accctgtcccagacgccgctgtccgtgccctcggcgcaggcggtggcacgcgccgtcgtc
gagcgcggcagcgaggaaggactggacttcctgccctgggaggttggcgagcatcctgcc
ggcgtgctgcgggcgcggctcgcactgctgcaccgggtgctgggggaaccgtggcctgcc
gttgatgacgcgtccctgctggcgcgcgccgaggaatggctggtaccagcggtccgggcg
acggccggcgcaggcaggcgcttcgaggtgggacgccttgatctcacgacggcgctgcgc
accctcctgccctggccacaggccgccaggctcgacgagctggcccccgagcgcctcacg
gttccctcaggatcccaggtgcggctgagctacctgggtgagcagggcgagatgcttgag
cgccccgtcctggcagtgcgggtccaggagtgcttcggctgggcgagcactccgcgggtg
gctgactctcgcgtgggcgtgctgctgcacctcctgtctcccgcacgccggcccgtggcc
gtcacggacgatctgcgctccttctgggaggggccgtatcagcaggtgcgccgcgagctg
cgcggacgctaccccaagcactcctggcccgaggacccgtggacggctccggcgatccgg
gggaccaagcgccggggctag
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