Actinomyces urogenitalis: R3I39_09700
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Entry
R3I39_09700 CDS
T09523
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
auo
Actinomyces urogenitalis
Pathway
auo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
auo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R3I39_09700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
auo03019
]
R3I39_09700
03400 DNA repair and recombination proteins [BR:
auo03400
]
R3I39_09700
Enzymes [BR:
auo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R3I39_09700
Messenger RNA biogenesis [BR:
auo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R3I39_09700
DNA repair and recombination proteins [BR:
auo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
R3I39_09700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Pribosyltran
ResIII
Motif
Other DBs
NCBI-ProteinID:
WOO94936
LinkDB
All DBs
Position
2271151..2273409
Genome browser
AA seq
752 aa
AA seq
DB search
MSTSLLRERAETILQLLVSGPGARLREDQWTAIHALVALRRRALVVQRTGWGKSAVYFVA
TALMREGWGGWQPGTPPPPVRAQGAPASPGVGATVIISPLLALMRDQVAAAERAGIQAAT
INSANATQWSEVEARIATGEVDVLLVSPERLNNPVFREEVLPHLASDTGLVVIDEAHCIS
DWGHDFRPDYRRIRTLLADLPAHTPVLATTATANERVTRDVAEQLSAGEDPSTDHQPVLV
LRGSLDRSSLHLGVKQLEDDASRLAWLTSYLRSTPGSGIVYCLTVAAAGEITAQLRQAGL
EVAAYTGGTDPAERERLESELKANQVKALIATSALGMGFDKPDLAFIVHLGAPSSPVAYY
QQVGRGGRGVERAEVVLLPGAQDQAIWDWFGSQAFPPEQDVRQVLAVLEEAHSQGEGPLS
TAVLETSTSLRRTRLESMLKVLDVDGAVRRVRGGWGWTGTPWVYDAARYARVAAARAREQ
DLMITYESLRAPLCRMAFLRQTLDDPTLEQDWRCGRCDLCAGLSLADHADAQEVETARQA
LAQVGTVIEPRRQWPTGMDRLGLASLRGRIKEEHRAGRGLAVGRLDGLGISTTLRTLLDS
GTDGEVPASLRQAVVEVAQRLGSLIETETGGEEDERHSPLVVVIIDSRTRPTLVRQLGRA
VARTLAAQPLAVVGVRGEAGRHDVGSPFRLAAVARSLTLQDWRQDTLASLQGATVVLVDD
WTDSGWTLTLATRLLREAGAASVYPFVLAQRS
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atgagcacctcactcctgcgagagcgcgccgagacgatcctgcagctgctggtctccggc
cccggggccaggctgcgcgaggaccagtggacggcgatccacgccctggtggcgctgcgt
cgccgcgccctggtggtccagcgcaccgggtggggaaagtccgccgtctacttcgtggcc
accgcgctcatgcgcgaaggctggggcggctggcagccaggcacacctccgccgcccgtg
cgtgcgcagggcgcccccgccagcccgggcgtaggagccaccgtcatcatctcgccctta
ctggccctcatgcgcgatcaggtcgctgccgccgagcgcgccgggatccaggcggccacg
atcaactcagccaacgccacgcagtggtccgaggtcgaggcccgtatcgccaccggcgag
gtcgacgtcctcctggtctccccagagcggctcaacaaccctgtcttccgcgaggaggtc
ctgccccacctggcctcggacaccggcctggtcgtcatcgacgaggcccactgcatctcg
gactggggccacgacttccgcccggactaccggcgtatccgtaccctgctggccgatctg
cctgcccacacccccgtcctggccaccacggccacggccaacgagcgcgtcacccgcgac
gtcgctgagcagctgagcgcaggagaggatccttccaccgaccaccagcccgtcctggtc
ctgcgtggcagcctggaccgttcctccctgcacctgggggtcaagcagctggaggatgac
gcctcccgtctggcctggctgacaagctacctgcgttccacgcccggctccgggatcgtc
tactgcctcaccgtcgcggccgccggtgagatcaccgcgcaactgcgtcaggcaggcctc
gaggtcgccgcctacaccggcgggaccgatccggccgagcgcgagaggctggagagcgag
ctcaaggccaaccaggtcaaggccctcattgcgaccagcgcgctcggaatgggttttgac
aagcccgacctcgccttcatcgtccacctcggggcccccagctcccccgtggcctactac
cagcaggtcgggcgcgggggccgtggcgtggaacgcgccgaggtcgtgctgctgcccggc
gcccaggaccaggcgatctgggactggttcggttcccaggccttcccacccgagcaggac
gtgcgccaggtgctcgccgtcctggaggaggcgcacagccagggagagggcccgctgagc
accgcagtgctagagacctccaccagcctgcggcgcaccaggctggagtccatgctcaag
gtcctggacgtcgacggcgccgtgcgccgggtcaggggcggatggggctggacaggcacg
ccctgggtctatgacgccgcgcgctatgcgcgtgtggcagccgctcgcgcccgcgagcag
gacctcatgatcacctacgagtccctccgggcgccgctgtgccgcatggccttcctacgc
cagaccctggatgacccaaccctggagcaggactggcgttgcggacgctgcgacctgtgc
gcaggactgtccctggctgaccatgccgacgcccaggaggtggagaccgctcgccaggcg
ctggcgcaggtaggcactgtcatcgagccccgacgccagtggcccacgggcatggaccgg
ctgggactggccagcctacgcgggcggatcaaggaggagcaccgcgccggccgcggcctg
gcagtcgggcgcctggacggcctcggaatctcgacgacgctgcgcacactcctcgactcc
ggcacggatggcgaggtccccgcctccctgcggcaggccgtggtcgaggtcgcgcagcga
ctgggcagcctcatcgagaccgagacgggcggtgaggaagacgaacgccacagccccctg
gtcgtcgtcatcatcgactcgcgcacccgtcccacgctcgtgcgtcagctgggccgcgcc
gtggctcggaccctggcggcccagcccctagcggtggtcggggtccgcggcgaggccggg
cgccacgacgtcggttcccccttccgcctagccgccgttgcccgctcgctcacgctccag
gactggcgtcaggacaccctggccagcctccagggagccacggtggtcctcgttgacgac
tggacggactcaggctggacgctcacgctggccacgcgcctgctgcgcgaggccggcgcc
gccagcgtctatcccttcgtcctggctcagcgttcgtag
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