Aureispira anguillae: AsAng_0048340
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Entry
AsAng_0048340 CDS
T08565
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aup
Aureispira anguillae
Pathway
aup03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aup00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AsAng_0048340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aup03400
]
AsAng_0048340
Enzymes [BR:
aup01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AsAng_0048340
DNA repair and recombination proteins [BR:
aup03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AsAng_0048340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
BDS14068
UniProt:
A0A915YIY8
LinkDB
All DBs
Position
complement(5683189..5686578)
Genome browser
AA seq
1129 aa
AA seq
DB search
MNLEQLFQQYTTDPRSEQIVATLNKKEQLNLQLKGLIGAQPAFVITAIHQLYQKPFLVVA
QDKEEAAHWQNDISSLLKKGKEALFFPDSYRRPMGFDKLDRTCVLQRTETVSKLVEHPNA
PAIVVTYPEALFEKVVAPSNLKDAAIEIKVGTELDVPFLVEILVEYGFVKVDFVYEPGQF
SVRGGIIDIYSYGNEHPYRVELFDVEVESIRTFDPTSQLSTRKIAFVTIVPNVNTEFEAQ
QKVSLLEVLPKETVVWMADTQMLLDKLQTCFEKSKEFLSVVEELAAKARGEESLLLQGAA
FLYPREVIGALDQYSVLELSNETLLKPTTLISYQTTPQPSFNKNFKVLIQNLEENTKKGI
TNYIFAENVKQIERFYSIFEDLDVQVQWHSIPTAIHQGFVDYHLKVAVYTDHQIFERYHR
SRLRQGFDKNTALKIKALSELKPGDFVTHIDHGVGRYGGLEKIELQGKHQEAVKLVYKDN
DILYVGIQSLHKISKFTGKEGSAPKVHKLGSNAWVNTKRKTKKKIKELAFDLIKLYAKRK
STVGIEFPEDSYLQNELEASFIYEDTPDQAKATQEVKEDMMKPYPMDRLICGDVGFGKTE
IAVRAAFKAIVAGKQVAVLVPTTILALQHAQTFRERLKKFDVKVEYINRFRTTKEKTAIY
KKLEAGEIDLLIGTHAILNKKVKFGDLGLLIVDEEQKFGVGAKEKLRNIRVNVDTLTLTA
TPIPRTLQFSLLAARDLSVMNTPPPNRQPIETEVRIFSGDMIKEAIENEVNRGGQVFFVH
NRVQNLADMASMVKELCPNVDIAMAHGQMDATALEQTLMDFIKGYYEVLICTNIIETGLD
ISNANTIIINNAHHFGLSDLHQLRGRVGRSNKKAFCYLLAPPMSTLTSDARKRLQTVEQF
SELGSGFNIAMRDLDIRGAGNLLGGEQSGFVMNMGYETYQKILNEAIQELKQTDYKELFK
EELEQKREFVQDVNIESDLDLMIPDEYVASIQERLALYQELNKIKDEAGIAKFKEMLEDR
FGKTPKAVNNLFEAIRIRWKAKGLGFERIMLKNRKLRCYFVSDQQSAFFDSQFFGTLLGH
IQKKSDHRFFLKQSTRYLMLVCENVKDFKQTHEILQQLEKAVLKEVVEH
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgaatttagagcaactttttcagcagtataccacagatcctcgaagcgaacaaattgta
gctactttaaataaaaaagagcagctaaatttacaattaaaggggctgataggcgcacaa
cctgcttttgtgataacagcaattcatcagctttaccaaaaaccatttttggtggttgca
caagataaagaagaagccgctcattggcaaaatgatattagttctttattgaagaaaggc
aaagaagccttattttttcccgattcttatcgccgcccaatggggtttgacaaactggat
agaacctgtgttttgcagcgaacagagaccgttagtaaacttgtggagcatcctaatgca
cccgctattgttgttacgtatccagaggctttgtttgaaaaagttgttgcgccatctaat
ttgaaagatgcggctattgaaatcaaagtaggaacagaattagatgtgccatttttggtg
gaaatactagttgagtatggttttgtaaaagtagattttgtctatgagccagggcagttt
tctgtacgagggggcattatcgatatttattcttatggcaatgaacacccttatcgagta
gagttgtttgatgtagaggtagaaagcatccgaacctttgaccctacctctcagttgtct
actcgaaaaattgcatttgtaacgattgtacccaatgtaaatacagaatttgaggcacag
caaaaagtttctttattagaggtactgcctaaagagaccgtcgtttggatggcagataca
cagatgctcttagataagctgcaaacttgttttgaaaaatcaaaagagtttttgtcggta
gtagaagaattggcagctaaagctagaggagaggagagcttattgctgcaaggggctgcc
tttttgtatcctagagaggtaataggagcgctagatcaatattcagttttggaattgagc
aacgaaactttgctaaagccaacaacgcttattagttatcagaccacaccacagccaagt
tttaataagaattttaaggtgcttattcaaaacttagaagagaatactaaaaaaggaatt
accaattatatttttgctgaaaatgtaaaacaaattgaacgtttttatagcatttttgaa
gacctagacgtacaggtgcaatggcattcgattcctacggctattcatcaagggtttgtg
gattatcacttaaaggtagccgtttataccgatcatcagatttttgaacgttaccatcgt
tctcgtttgcgtcaaggttttgataaaaatacagcactcaaaataaaagccttgagcgag
ttgaagcctggggattttgtaacacatattgaccatggagttgggcgctatggagggtta
gaaaaaatagaattgcaggggaaacaccaagaagccgtcaaattggtgtataaagacaat
gatattctttacgtgggaattcaatccttgcacaaaatatcaaaattcacaggcaaagaa
ggatctgcgcctaaggtacacaaattggggtcaaatgcatgggtgaacaccaagcggaaa
accaagaaaaaaatcaaagaacttgcctttgatttgattaaattatacgccaagcgaaaa
tcaactgttggaatcgagtttcctgaagatagctatttgcaaaatgaattggaggcttct
tttatttatgaagatacccccgaccaagccaaggcaacgcaggaggttaaggaggatatg
atgaagccttaccctatggatcgattaatttgtggcgatgtagggtttggaaaaacggag
attgctgttcgggctgcttttaaagctattgttgcaggaaaacaggttgcggtgttggta
ccaactactattttggcattgcaacatgctcaaacctttcgagagcgcctcaaaaagttt
gacgtaaaggtggaatacatcaaccgttttaggacgactaaggaaaaaacagccatctat
aaaaaattggaggctggagaaattgatttgttgatcggaacacatgccattttaaataaa
aaagtaaaatttggtgatttggggcttttgattgttgatgaggagcaaaaatttggggtg
ggagccaaagaaaaattgcgtaatattcgagtgaatgtagatacattaaccttaactgct
actccaattcctagaaccttgcaattttcattgctggccgcaagagatttgtcggttatg
aatacaccacctcccaatcgacagcctatagagacggaggtgcgtatatttagtggggat
atgattaaagaagcaatcgaaaatgaagttaatagaggtgggcaggtcttttttgtgcac
aatcgggtgcaaaacctagcggatatggcttctatggtcaaagaattgtgccctaacgtt
gatattgcaatggcgcatggtcaaatggatgctacagcattggagcagactttaatggat
tttattaaaggctattacgaggttttgatttgcacaaatattattgagacagggcttgat
atttcgaatgccaataccattattatcaacaatgcccatcattttggcttgagtgattta
caccagctaagaggtcgggtgggacgttctaacaaaaaagcattctgttatttattggcg
cctccaatgtctaccttaacttcggatgctcgcaagcgtttgcagaccgtagagcaattt
tcagaattgggaagtggttttaatattgcaatgcgagatttggacattcgaggtgctgga
aatttattgggaggagaacaaagtggttttgtaatgaatatggggtacgaaacctatcag
aaaattctgaatgaggcgatccaagaactgaaacaaaccgactataaggagttgtttaaa
gaagaattggagcaaaaacgagaatttgtccaagatgtcaatattgaatctgatttggat
ttgatgatccctgatgaatatgttgcaagtattcaggagcgattggctttgtatcaagag
ctgaataagattaaagatgaagcaggaattgctaaatttaaagaaatgttggaagatcgt
tttggtaaaacacctaaggcggttaacaatctttttgaggcgatccgaattcgctggaag
gcaaaaggtttaggttttgaacgaattatgctcaaaaacagaaaattgcgttgctatttt
gttagcgatcagcaatctgctttctttgacagtcaattttttggaacactgctagggcac
attcaaaagaaaagcgaccatcgattctttctaaaacaatctactcgttatctaatgttg
gtttgtgagaatgtcaaagattttaaacaaacccacgaaatacttcaacaattagagaaa
gctgttttgaaggaagtagttgaacattag
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