Aerococcus sp. Group 1: HMPREF9243_0414
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Entry
HMPREF9243_0414 CDS
T01447
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aur
Aerococcus sp. Group 1
Pathway
aur03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aur00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HMPREF9243_0414 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aur03021
]
HMPREF9243_0414 (rpoC)
03400 DNA repair and recombination proteins [BR:
aur03400
]
HMPREF9243_0414 (rpoC)
Enzymes [BR:
aur01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HMPREF9243_0414 (rpoC)
Transcription machinery [BR:
aur03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HMPREF9243_0414 (rpoC)
DNA repair and recombination proteins [BR:
aur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HMPREF9243_0414 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AEA00681
LinkDB
All DBs
Position
413662..417360
Genome browser
AA seq
1232 aa
AA seq
DB search
MREVDLLVDVNKFESIKIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGP
TKDYECACGKYKRIRYAGVVCDRCGVEVTKAKVRRERMGHLELASPVTHIWYFKGIPSRM
GLILDMSPRSLEEVIYFASHVVIDGGDTPLAPKQLLSEREYREYKAEYGDRFQAGIGAEA
IKELLRRVDLERECAELKEELRTAKGQKRTRAIRRLDIMDAFRKSGNKPEWMVLDVIPVI
PPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPNIIVQNEKRMLQEAVDA
LVDNGRRGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIAIGPHLKFYQ
CGLPKEMALELFKPFLIRELVDREIATNAKHAKRMIERKDDAVWEPLGEIMREHPVLLNR
APTLHRLGIQAFEPVLVEGKAIRLHPLACEAYNADFDGDQMAVHLPLGEEAQAEARILML
AASHILNPKDGQSVVTPSQDMVLGNYYLTQEEAGMTGEGMKISSLSEAHIAYTNGAAQLH
TRVVISPKHFPKYAWTDQQKEQLMITSIGKLFFNEIMPADFAYINEPTSENLNGQTADRF
FVNPGEDTEKAIAQLETTAPFKKGYLEEIIAAIFKRLKVTETSQFLDRLKALGYYYSTKS
GITVGIADITVLDAKDQHVDKGHKRVDNIMKQYRRGLITDDERYDQVISTWNDVKNDIED
ELKHSLSPDNPFFIMMDSGARGNISNFTQLAGMRGLMAGPSGKIIELPVTSNFREGLSVQ
EMFISTHGARKGMTDTALKTADSGYLTRRLVDVAQDVIIRENDCGTDRGLTVSAIKEGNE
MIESLAERLTGRYIQKTVRDPETGEVLAHHNELVSPETAAKIEDAGIKQVTIRSAFTCRT
RHGVCKYCYGSDLATNGEVEVGEAVGIVAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLP
RVQEIVEARHPKGQAVITEVTGEVVAIDIEEETRTKTVTVKGETDEREYKVPYTARMKVS
EGDLIERGAQLTEGPIDPKELLRITNSLTVENYMLAEIQRVYRQQGVDINDKHVEVLLRQ
MMRKVRVLDPGASDLLPGHLMDIGEFEDANEEIIKTGQQPATCQPVLLGITKAALETKSF
LSAASFQETTKVLTDAAISGKRDELLGLKENVIIGKIIPAGTGVGRYRHMEPEKLGVEQV
VEVPAHEPSDNENPAEIATITKPIDENYSGMP
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atgagggaggttgacctcttggtcgatgtaaataaatttgaaagtataaaaattggttta
gcctcaccagataagatccgttcctggtcctatggtgaagtcaagaaaccggaaacaatc
aactaccgtaccttaaaaccagaaaaagatggtcttttctgtgaacgtatttttgggcca
accaaggactacgaatgtgcctgtggaaagtataaacgcatccgttatgcgggtgtggta
tgtgaccgttgtggggttgaagtcaccaaggccaaggtccgtcgtgaacggatgggccac
ttggaattagcttcaccagttacccatatttggtactttaaaggcatccctagtcggatg
ggcctgatcttagatatgagtccacgatcccttgaagaagtgatttattttgcttctcac
gtggtcattgatggtggggacacacctttagcgcctaagcaattactttctgaaagagaa
taccgggagtataaggctgaatatggcgaccgttttcaagcgggaattggtgctgaagcc
attaaggaacttctccgccgcgtagaccttgagcgtgaatgtgcggaattaaaagaagaa
ttacggacagctaagggtcaaaaacggacccgggcgatccgtcgcttagacatcatggat
gcctttagaaaatccgggaataaaccggaatggatggttcttgatgtgatccctgtgatc
ccacctgaactccgtcccatggtgcaactggatgggggccgtttcgcaaccagtgactta
aacgacctctaccgccgggtgattaaccggaataaccgtttaaaacgtttattagacctc
aatgcaccaaatattattgttcaaaatgaaaaacggatgctccaagaagccgttgacgcc
ctagtcgataatggtcgtcgcggccgtcctgtgactggaccgggtaatcgcccattgaag
tccctctcccatatgttgaaagggaagcaaggtcgtttccgccaaaacctcttagggaaa
cgggtggactactctggacgttccgttattgccattggaccacacttgaagttctaccaa
tgtggtctgcctaaagaaatggccctagaactctttaaaccattcttgattcgggaattg
gtggaccgtgaaattgccaccaacgctaaacatgctaaacggatgattgaacgtaaggat
gatgctgtttgggaacctctcggagagatcatgcgtgaacacccggtattacttaaccgg
gcacctactctccaccgtttggggattcaagcctttgaaccagtcttggttgaagggaag
gcgatccgtcttcaccccttagcctgtgaagcttataatgccgactttgacggggaccaa
atggcggtccacttacctttaggagaagaagcccaagctgaagcgcgtatcttaatgctg
gccgcttcccacatcctaaaccctaaagatggtcaatcagtggttaccccatcccaagac
atggtcttagggaactactacttaacccaagaagaagccgggatgactggggaaggaatg
aagatttcttcactcagcgaagcccatattgcttatactaatggggcggctcaattgcat
acccgggtggtgatcagtccgaaacacttccctaaatatgcctggaccgaccaacaaaaa
gaacaattaatgattacctctattggtaaattgttctttaatgagatcatgccggctgat
tttgcttatattaatgagcccacatcagaaaacttaaatggtcaaaccgctgatcgtttc
ttcgtcaaccctggggaagataccgaaaaagccattgctcaattagagaccacggcgcca
tttaagaagggctacttagaagaaattatcgccgccatcttcaagcgcttgaaggttact
gaaacctcccaattcttagaccgcttgaaggctcttggttactactactccaccaagtca
gggattaccgttgggattgctgatattaccgttttagatgccaaggaccaacacgtggac
aagggacacaaacgcgttgacaatatcatgaagcaataccgtcgtggtttaattaccgat
gacgaacgctatgaccaagtcatcagcacttggaatgatgttaaaaacgacattgaagac
gaattgaaacacagtctgtctccagacaacccattctttatcatgatggactctggtgct
cgtggtaacatctccaactttacccaattagcggggatgcgtggtttgatggcgggtcca
agtggtaagattattgaactgccagttacttccaacttccgtgaagggctatcggttcaa
gaaatgtttatctccactcacggggcgcgtaaagggatgaccgataccgccttgaagacg
gctgactctggttacctcacccgtcgtctggttgatgtcgcccaagacgtgattatccgt
gaaaatgattgtggaaccgaccgcggtttaaccgtttcagccattaaagagggtaatgaa
atgatcgaaagcctggctgaacgcctgactggtcgttatatccaaaaaactgtccgtgat
ccagaaactggtgaagttctcgcccaccataatgagttggtttcaccagagaccgctgca
aaaattgaagacgctggcatcaagcaagtcaccattcgctctgcctttacctgtcggacc
cgccatggggtatgtaagtactgctacggttctgacttggcaaccaatggtgaagttgaa
gtcggtgaagcagttggtatcgtggctgcccaatccattggggaacctggtacccagttg
accatgcgtaccttccataccggtggggtggccggggatgacattacccaaggtttacct
cgtgttcaagaaatcgttgaagcccgtcatccaaaagggcaagcagtgattactgaagtg
accggggaagtcgtggcgattgatattgaagaagaaactcggaccaaaacggttaccgtc
aaaggggaaactgacgaacgcgaatacaaggtcccttacactgctcgtatgaaggtcagt
gaaggcgacttgattgaacgtggtgcccaattaaccgaagggcccattgatcccaaagaa
ttgctccggatcactaattccctcactgtagaaaactacatgttagcggaaattcaacgg
gtttaccgtcaacaaggggtggacattaacgacaagcacgtggaagtcctcctacgtcaa
atgatgcgtaaggtaagagtcttagacccaggcgcttctgacttgttgccaggacattta
atggacattggtgaatttgaagacgccaatgaggaaattattaagactggccaacaacca
gctacttgtcaaccagtcctcctaggaattaccaaggcagccctggaaactaagtccttc
ctatctgccgcgtccttccaagaaactaccaaggtcctcactgacgctgctattagcggt
aaacgggatgagttacttggattgaaagaaaacgtcattattggtaagataattcctgct
ggtactggtgtcggtcgctaccgtcacatggaaccagaaaaattaggtgtggaacaagtt
gttgaagtgccggcccatgagccatctgacaacgaaaacccagccgaaattgccacaatt
accaaaccaatcgatgaaaactatagcggtatgccttaa
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