Aerococcus sp. Group 1: HMPREF9243_1285
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Entry
HMPREF9243_1285 CDS
T01447
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
aur
Aerococcus sp. Group 1
Pathway
aur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF9243_1285 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aur03019
]
HMPREF9243_1285 (rnr)
03016 Transfer RNA biogenesis [BR:
aur03016
]
HMPREF9243_1285 (rnr)
Enzymes [BR:
aur01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HMPREF9243_1285 (rnr)
Messenger RNA biogenesis [BR:
aur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HMPREF9243_1285 (rnr)
Transfer RNA biogenesis [BR:
aur03016
]
Prokaryotic type
tRNA degradation factors
HMPREF9243_1285 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
S1_RRP5
S1CSD-TOTE-2
OB_HELZ2
Motif
Other DBs
NCBI-ProteinID:
AEA00464
LinkDB
All DBs
Position
complement(1313535..1315859)
Genome browser
AA seq
774 aa
AA seq
DB search
MNIDQVSQQLVAAVKKEATPLTIQEWSQRFNCNSSDDYPEFIKLVAQLQRNGDIEILDNG
GLVSKKSDKRYQGSFSLNQKGFGFVSIEGFDDDIFIPRGETGGAMNGDQVAVQLTKRSRG
EQKDEGTITEVLERALSRVTGEFVPYNDKLKAESGYIGGIRIQNKGEEMMTCFVLSDGLH
PVEGEIVIAEIAEYPSLDQPLQMTGRVIQTIGHKDAPGVDILAILNMFDIPHEFPEEVLD
EAEEVPEQIDPGETQKRDDYRSLLTITIDGADAKDLDDAISLRKLGNGHLELGVHIADVS
YYVTAGSAIDKEAWKRGTSVYLTDRVVPMLPQRLSNGICSLQANQDRLTMSCMMEIDPKS
VKVINYHIGPSIIQSDYRMVYDDVNKLLEGKDKQLSEKYAELLPMLNDMAALHQSLSDKR
HHRGAIDFDTPEAEIIVDKEGHPLDIVVRERGTAERMIESFMLAANETVAHEFTKRHLPF
IYRIHESPDDERMKTFIEFAQTLGVHVKKTDGKVSPKDLQNTLEEAAGESYAPVVQVMAL
RSMQQAKYDLQPIGHYGLAAKDYTHFTSPIRRYPDLLAHRLIRYYLTHKPNPAKKDELSQ
NIEVTADQASKTERRSVDAERETESLKKTEFMVDKVGEEFDGIISSVTKFGIFVQLANTV
EGLVHISNLDDDYYNYVDKHMILVGEHTGNIYRIGDPVRVKLVKADTDSRQIDFEIINPE
KKTKKTNSQPKKTDHKGNNIQGHKKHSKKAKKNKHKKKHKKQKNKKNFVIRKAK
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgaatatagaccaagtcagtcagcaattggtcgctgcagtaaaaaaagaagcgaccccc
ttaacgatacaagaatggagtcagaggtttaattgcaatagcagtgatgactatcctgaa
tttataaaattagttgcccagttacagagaaatggcgacatcgaaattcttgataacggg
ggcttagtttctaaaaaatcagacaaacgttatcagggaagtttttctttaaatcaaaaa
ggctttggttttgtttccattgaaggttttgatgatgatatttttatcccccgtggtgaa
actggcggcgcaatgaatggcgaccaagtggcggttcaattgactaaacgtagccgggga
gaacaaaaagatgaaggcacgattacagaggtactagaaagagctttgagtcgagtgacc
ggtgaatttgttccttataatgataagttaaaagccgaatccggttatattggtgggata
aggattcaaaataaaggcgaagaaatgatgacttgctttgtcttgagtgatggactacac
ccagtggagggtgaaattgtcatcgcagaaattgcagaatatccttccctcgaccagccc
ttacaaatgactggccgtgtcatccaaaccattggtcataaggatgctcctggggtcgat
attctcgctatcttaaatatgtttgatattccgcatgaatttcctgaggaggttcttgat
gaagcggaggaagtccctgagcaaattgacccaggggagactcaaaaacgtgatgattat
cgttccttacttacgattaccatcgatggggctgatgctaaagacttggacgatgcgatt
tccttaagaaaacttggcaatggccatctggagttaggtgttcatattgccgatgtttcc
tattatgttaccgcaggaagcgctattgataaggaagcctggaaacgtgggaccagcgta
tatttaactgatcgggtggttcctatgctacctcaacgcttatccaacgggatttgttcc
ttacaggctaaccaggaccgtttaaccatgtcatgcatgatggaaattgatcctaaatca
gtcaaggttataaattatcatattgggccaagcatcatccaatcggactatcggatggtt
tatgatgacgttaataaattattagagggtaaagataaacaattaagtgaaaaatacgct
gaacttttacctatgcttaatgacatggctgcactccaccagtctttaagcgataaacgc
catcacaggggggcgattgattttgatacgcctgaagctgaaatcattgttgataaagaa
ggccatccccttgatattgtggttagggaacgtggaacagctgaacggatgattgaatct
tttatgctagctgctaatgaaaccgtggctcatgaatttactaagcgccacctgcctttc
atttatcgtatccacgaatcccctgatgatgagcggatgaagacctttattgaatttgct
caaaccttaggggttcatgtgaagaaaacagacggtaaagtaagtcctaaagatttacaa
aataccctggaagaagcagctggtgaaagttatgctcccgttgtccaagtcatggcttta
cggagtatgcaacaggctaagtatgacctccagccaattggtcactatggcctagctgcc
aaggactatacccattttacttcaccaattcgtcgttatcctgacctcttagcccaccgc
cttatccgctattatctcacccacaagcccaatcctgccaagaaggatgagctcagtcaa
aacattgaagttactgccgaccaagcttccaaaacagagcggcgtagcgtggatgctgaa
agagaaaccgagagccttaagaaaactgaatttatggttgataaagttggggaagaattt
gatggtattatttcttcagtgaccaagttcggtatcttcgttcaactcgctaatacggtt
gaaggattggtccatatctctaacttggatgatgattattataactatgtggataaacac
atgatcttagtcggggagcatacggggaatatttatcgtataggagacccagtgcgggtg
aaattggtcaaggcagatacagactctagacagattgattttgagattatcaacccagag
aaaaagactaagaaaactaattcacagcctaagaaaaccgatcataaagggaataatatt
caaggacacaagaagcattctaaaaaagctaaaaagaataagcataagaaaaagcataag
aagcagaaaaataagaagaattttgttattcgaaaggctaaatga
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