Austwickia sp. Fred_18-Q3-R57-64_BATAC.85v2: IPK37_13245
Help
Entry
IPK37_13245 CDS
T07017
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
aus
Austwickia sp. Fred_18-Q3-R57-64_BATAC.85v2
Pathway
aus03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aus00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IPK37_13245 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aus03021
]
IPK37_13245 (rpoB)
03400 DNA repair and recombination proteins [BR:
aus03400
]
IPK37_13245 (rpoB)
Enzymes [BR:
aus01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IPK37_13245 (rpoB)
Transcription machinery [BR:
aus03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IPK37_13245 (rpoB)
DNA repair and recombination proteins [BR:
aus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IPK37_13245 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QQR99921
LinkDB
All DBs
Position
2898798..2902283
Genome browser
AA seq
1161 aa
AA seq
DB search
MAASRTANQKMSTALTASGRVSFAKIREPLEVPDLLALQTESFDWLLGNERWQARVEEAL
EAGRNDVPERSGLEEIFEEISPIEDFAGSMSLSFRDHRFEEQKYSIEECKERDMTYSAPL
FVTAEFMNNNTGEIKSQTVFMGDFPLMTDRGTFVINGTERVVVSQLVRSPGVYFERTPDK
TSDKDIYSAKVIPSRGAWLEFEIDKRDMVGVRIDRKRKQSVTVLLKALGWSDAQILETFG
EYESIRATLEKDHTGGQDEALLDIYRKLRPGEPPTKEAAQALLDNLYFNPKRYDLAKVGR
YKLSKKLGIEADLTSSTLTVDDVVATIRYIVALHAGESTIKGVRHGEEADIRVEVDDIDH
FGNRRLRNVGELIQNQVRTGLSRMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFG
TSQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCPIETPEGP
NIGLIGSLASYGRINPFGFIETPYRKVVDGQVSDEVHYLSADEEDEFVIAQANAPLTEDG
HFAEERVLVRTKGGEAIDVPGGEVDYMDVSARQMVSAATALIPFLEHDDANRALMGANMQ
RQAVPLVRSEAPLVGTGMEYRAALDSGDVVRARQGCVVESVAADTVTVANDDGTHETYRI
AKFMRSNQGTCYNQRVVVAEGQRLEAGEVIADGPATDGGEMSLGRNLLVAFMPWEGLNYE
DAIILSQRLVQDDVLSSIHIEEHEIDARDTKLGPEEITRDIPNVSEEVLADLDERGIIRI
GAEVRDGDLLVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGETGTVIHVKV
FDREEGDELPPGVNQLVRVYVANRRKITDGDKLAGRHGNKGVISKIVPVEDMPFLEDGTP
VDVILNPLGVPGRMNIGQVLEIHLGWAASRGWTIDGDPEWAANLPAEVREAGPRTRVASP
VFDGAKEEEITGLLDSTLPTRDGVRLIGASGKAQLFDGRSGEPFPAPISVGYMYILKLHH
LVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDD
VTGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGSQIDLREPDQEVF
RAAEELGIDLSRREPSSVEEV
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
ttggctgcctcgcgcactgcgaaccagaagatgtccacggcactgacggcctccggccgc
gtgtcgttcgccaagatccgagagccgctagaggtacccgacctcttggccctgcagacc
gagagtttcgactggctgctcggcaacgagcggtggcaggcccgggtcgaggaggccctg
gaggccggccgcaacgacgtacccgagcgctccggactggaggagatcttcgaggagatc
tcgcccatcgaagacttcgcgggatcgatgtcgctctcgttccgggaccaccggttcgag
gagcagaagtactccatcgaggagtgcaaggaacgcgacatgacctacagcgccccgctg
ttcgtcaccgccgagttcatgaacaacaacaccggcgagatcaagagccagacggtgttc
atgggcgacttcccgctcatgaccgaccggggcaccttcgttatcaacggcacggagcgc
gtcgtcgtctcccagctggtccgcagcccgggcgtgtacttcgagcgcacccccgacaag
acctccgacaaggacatctactcggccaaggtgatcccgagccgcggtgcctggctggag
ttcgagatcgacaagcgcgacatggtcggcgtgcgcatcgaccgcaagcgcaagcagtcc
gtcacggtgctgctcaaggcgctcggctggtcggacgcgcagatcctggagaccttcggc
gagtacgagtcgatccgggccaccctggagaaggaccacaccggcggccaggacgaggcg
ctgctcgacatctaccgcaagctgcgcccgggcgagccgccgacgaaggaggcggcccag
gccctcctggacaacctctacttcaaccccaagcgctacgacctggccaaggtgggtcgc
tacaagctgagcaagaagctcggcatcgaggccgacctgacgagttcgaccctgacggtc
gacgacgtcgtcgccacgatccgctacatcgtcgccctgcacgcgggggagagcacgatc
aagggcgtccggcacggcgaggaggccgacatccgggtcgaggtcgacgacatcgaccac
ttcggcaaccgccgcctgcgcaacgtcggcgagctcatccagaaccaggtccgcaccggg
ctgtcccgcatggagcgggtggtccgcgagcggatgaccacgcaggacgtcgaggcgatc
acgccgcagaccctgatcaacatccgcccggtcgtcgcctccatcaaggagttcttcggc
acgagccagctatcccagttcatggaccaaaacaacccgctggccggcctgacccacaag
cggcgcctgtccgcgctgggcccgggcggtctgtcccgcgaccgcgcgggcatggaggtc
cgcgacgtccaccccagccactacggccggatgtgcccgatcgagacgccggaaggcccg
aacatcggcctcatcggctcgctggcctcctacggccggatcaaccccttcggcttcatc
gagacgccgtaccgcaaggtggtggatggccaggtcagcgacgaggtgcactacctctcc
gcggacgaggaggacgagttcgtcatcgcgcaggccaacgcgccgctgacggaggacggc
cacttcgccgaggagcgggtcctggtccgcaccaagggcggcgaggcgatcgacgtcccg
ggcggcgaggtcgactacatggacgtctcggcccggcagatggtctccgcggccaccgcg
ctgatcccgttcctggagcacgacgacgccaaccgcgcgctcatgggcgccaacatgcag
cgccaggcggttccgctggtgcgcagcgaggccccgctggtcggcacgggcatggaatac
cgcgccgctctcgactccggggacgtcgtgcgcgcccggcagggctgcgtggtcgagtcc
gtcgccgcggacacggtcaccgtggccaacgacgacggcacccacgagacctaccggatc
gccaagttcatgcgctccaaccagggcacctgctacaaccagcgggtcgtcgtggcggag
ggccagcggctggaggccggcgaggtcatcgccgacgggcccgccaccgacggcggcgag
atgagcctcggccgcaacctcctcgtggcgttcatgccctgggagggcctgaactacgaa
gacgcgatcatcctgtcccagcgcctggtgcaggacgacgtgctctcttcgatccacatc
gaggagcacgagatcgacgcccgcgacaccaagctgggccccgaggagatcacccgggac
atcccgaacgtctccgaggaggtcctggccgacctcgacgagcgcggcatcatccgcatc
ggcgccgaggtccgcgacggcgacctgctggtcggcaaggtcacgcccaagggtgagacg
gagctgaccccggaggagcgcctgctgcgcgcgatcttcggcgagaaggcccgcgaggtc
cgcgacacctccctgaaggtgccgcacggcgagaccggcacggtcatccacgtgaaggtc
ttcgaccgggaggagggcgacgagctgcccccgggcgtcaaccagctcgtgcgggtctac
gtcgccaaccggcgcaagatcaccgacggcgacaagctcgccggccggcacggcaacaag
ggcgtcatctccaagatcgtgccggtcgaggacatgccgttccttgaggacggcaccccg
gtcgatgtcatcctcaacccgctcggcgtaccgggccgcatgaacatcggtcaggtcctc
gagatccacctgggctgggccgccagccgcggctggaccatcgacggcgatccggagtgg
gcggcgaacctgccggccgaggtccgcgaggccgggccgcgcacgcgggtcgcctcgccg
gtgttcgacggcgccaaggaagaggagatcaccggtctgctcgactcgacgctgccgacc
cgcgacggcgtacggctcatcggcgcctccggcaaggcgcagttgttcgacggccgctcc
ggcgagccgttcccggcgccgatctcggtgggctacatgtacatcctcaagctgcaccac
ctcgtggatgacaagatccacgcgcgcagcaccggcccgtactcgatgatcacccagcag
ccgctgggtggtaaggcccagttcggtggccagcggttcggcgagatggaggtgtgggca
ctcgaggcgtacggcgccgcctacgccctgcaggagctgctcacgatcaagtccgacgac
gtcaccggccgcgtgaaggtttacgaggccatcgtcaagggcgagaacatccccgagccc
ggcatccccgagtccttcaaggtcctcatcaaggagatgcagtccctctgcctgaacgtg
gaggtgctgtcctccgacggcagccagatcgacctgcgcgaaccggaccaggaagtgttc
cgggccgcggaggagctcggcatcgacctgtcccggcgtgagcccagttctgtcgaagag
gtctga
DBGET
integrated database retrieval system
