Austwickia sp. Fred_18-Q3-R57-64_BATAC.85v2: IPK37_17550
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Entry
IPK37_17550 CDS
T07017
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
aus
Austwickia sp. Fred_18-Q3-R57-64_BATAC.85v2
Pathway
aus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IPK37_17550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aus03019
]
IPK37_17550
03400 DNA repair and recombination proteins [BR:
aus03400
]
IPK37_17550
Enzymes [BR:
aus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IPK37_17550
Messenger RNA biogenesis [BR:
aus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IPK37_17550
DNA repair and recombination proteins [BR:
aus03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
IPK37_17550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
QQS02983
LinkDB
All DBs
Position
complement(3833881..3836004)
Genome browser
AA seq
707 aa
AA seq
DB search
MPDAAAAAVADRVIAALAGPGARLKPDQEQAVAALLRPAARVLVVQATGWGKSAVYWVAA
AALRARGAGPALVVSPLLSLMRDQVAAARRAGLTAETLNSANRDDWDRIEGELAGDRVDV
LLVSPERLANPSFGRRVLDRLTGRLGLLVIDEAHAVSDWGHDFRPDYRRVADVLRRLNPA
APVLATTATANERVSADVAAQLGDSTLVQRGPLARASLDLAVVPGLDALSRYAWIVEHLP
VLPGSGIIYTLTVADAERLAAAITARHGAALPVAAYTGALEGAQRERLEDDLRANRLKAL
VATSALGMGYDKPDLGFVVHAGAPPSPVSYYQQVGRAGRAIERAVVALLPAEGDERIWEY
FATATLPDPRDVTRLLSALPGADEPAASVPALEAETGLRRTKVELLLKQLAVDEVVDRGT
EGWRATGREWFYDAEHYAGVLATRRREADIMRRYLAGESCLMALLQSALDDPSVAPCGRC
SVCRGHLPQGWSARPPEGTVTAVRRVLRGRTHELEPRKMWPGGAFGARGRIPPDLAVVVG
RVLVHADAPEWADARAGSLAGQPSPAPHGSQASRGSVEPELLAAAVTALIGWKDDWPARP
DAVVWLDAARLPAVAEAVATHLGAVGRLPVTRWPWDGDGPPPDAASAQEAAYWRDALEAS
PPPVVGVPCVLLVVDASVSGWAVTIAGAALRRAGAAHVLPFVVHRPR
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atcccggacgccgccgcagcagccgtggcggaccgcgtcatcgcggccctggccgggccg
ggcgcgcggctgaagccggaccaggagcaggccgtcgcggcgctgttacggcccgcggcg
cgggtgctggtggtccaggccacggggtggggcaagtcggcggtgtactgggtcgcggcg
gccgcgctgcgcgcccggggggccggccccgcgctcgtcgtctcgccgctgttgtccttg
atgcgcgaccaggtcgcggccgcccgccgcgcggggctcaccgcggagacgctgaactcg
gccaaccgcgacgactgggaccgcatcgagggggagttggcgggcgaccgggtcgatgtc
ctgctcgtgtctccggagcggctggccaatccgtcgttcggccggcgggttctggaccgg
ctcaccgggcggctgggccttctggtcatcgacgaggcccacgccgtctccgactggggc
cacgattttcggccggactatcgccgggtggccgacgtcctgcgccggctcaacccggcg
gcccccgtgctcgcgaccaccgcgacggccaacgagcgggtctccgcggatgtcgctgcg
cagctgggggactcgacgctggtccagcggggcccgctggcccgcgcgagcctggacctg
gcggtcgtgcccggcctggacgcgctgtcccgctacgcctggatcgtcgagcacctgccc
gtgctgccgggctcgggcatcatctacacgctgacggtggccgacgcggagcgcctggcg
gccgccatcacggcccgccacggcgcggcgctgccggtggccgcctacaccggcgcgctg
gagggggcgcagcgcgagcgcctcgaggacgacctgcgcgcgaaccggctcaaggcgctg
gtcgcgacctcggcgctcgggatgggatacgacaagcccgacctgggcttcgtcgtgcat
gcgggggcgccgccgtcccccgtctcgtactaccagcaggtcggccgcgccgggcgggcc
atcgagcgggccgtggtcgcgctgctgcccgccgagggggacgagcgcatctgggagtac
ttcgccacggccacccttcccgatccgcgcgacgtgacccgcctgctctcggcgctgccc
ggggctgacgaacccgccgccagcgtgcccgccctggaggcggagaccgggctgcgccgg
accaaggtcgagctgctgctcaagcagctcgccgtcgacgaggtggtcgatcggggcacg
gagggctggcgcgccactgggcgggaatggttctacgacgcggagcactatgcgggcgtc
ctcgcgacccggcgccgcgaggcggacatcatgcgccgctacctcgccggcgaatcctgc
ctgatggcgctgctgcagagtgccctggacgatccctcggttgcgccctgcgggcgctgc
tcggtgtgccgcgggcacctgccgcaggggtggtcggcgcggccgccggaggggacggtc
acggccgtacgccgggtgctgcgtggccggacgcacgagttggagcctcggaagatgtgg
ccgggcggggccttcggcgcccgcggtcgcatccctcccgacctggccgtcgtcgtcggc
cgggtcctcgtgcacgccgacgccccggagtgggcggacgcccgggccggcagcctcgcc
ggccagccgtccccagcgccccacgggtcccaggcttcccgggggtccgtcgaaccggaa
ctgctcgcggcggccgtgaccgccctgatcggctggaaggacgactggccggcccgcccc
gacgcggtcgtgtggctcgacgcggcccggctgccggccgtggccgaggcggtcgccacg
cacctgggcgccgtcggccgcctgcccgtgacgcggtggccctgggacggggacggaccg
ccaccggacgcggcctccgcgcaggaggcggcgtactggcgggacgcactggaggcctcc
ccgccgccggtcgtcggggtgccttgcgtgctgctcgtggtggacgcctcggtctcgggg
tgggccgtcacgatcgccggtgccgccctgcggcgtgccggggcggcccacgtgcttccg
ttcgtcgtgcatcggccgcggtga
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