Aurantimicrobium sp. INA4: AINA4_01640
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Entry
AINA4_01640 CDS
T10136
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aut Aurantimicrobium sp. INA4
Pathway
aut03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aut00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AINA4_01640 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aut03021
]
AINA4_01640 (rpoC)
03400 DNA repair and recombination proteins [BR:
aut03400
]
AINA4_01640 (rpoC)
Enzymes [BR:
aut01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AINA4_01640 (rpoC)
Transcription machinery [BR:
aut03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AINA4_01640 (rpoC)
DNA repair and recombination proteins [BR:
aut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AINA4_01640 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Birna_VP3
Motif
Other DBs
NCBI-ProteinID:
BDU10243
LinkDB
All DBs
Position
159305..163180
Genome browser
AA seq
1291 aa
AA seq
DB search
MLDATAFDKLRIGLATADDIRRWSFGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
SCGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVIDIDEEGRHADMPGLENELRLELKTLGDQRDARIADRMQRLEND
LAALEAEGAKSDQKRRAKDVAEKEMSQIRKSIDDEIARLERVWEDFRNLKVGDLKPEDAV
FNELVDRYGLYFDAFMGAEAIKRRLETFDLEAEAEALRLEITEGKGAKKIRAIKRLKVVS
SFINTGTSPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLSHAQNIKSAKRMVERSR
PQVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPTQDMIIGLHHLTTVKEGATGEGR
AFSSIAEAILAHDQHTLDLNAMARIRLNDVVFAEGEAPEGYTGGPVLVNTTLGQALFNEA
LPADYPYVQKVADKGTISAIVNDLAERYPKTVVAATLDNIKDAGFHWATRSGVTVALSDV
LTPPNKREIVAGYEKLAAKVQSEFEKGMITDNERRQELIKIWTDATAEVAEAMQKNFPAN
NTINRMVTSGARGNWLQVRNIAGMRGLVNNPKGEIIPRPIINSYREGLSVVEYFIATHGA
RKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTTKGLDLPIAAANAAGELVRDANV
ENSIYARSLAADAVDAQGNVIAKAGDDAGDVLIDTLIAAGINEVKVRSVLTCESATGVCA
ACYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGTAGADDITQGLPRVQEL
FEARTPKGASPIAETAGRITIEETDKSRKVILTPDNGDEPVIYPVLKRSTLLVSDGDHVE
LGQQLQVGTVDPKEVLRVQGVRAVQQHLVGGVQGVYRSQGVPIHDKHIEVIVRQMLRKVT
VVEHGDTELLPGELVDRSRYTELNRAALQEGKKTASARQEVLGITKASLATESWLSAASF
QETTRVLTQAAMDGKSDPLVGLKENVIIGKLIPAGTGLAKYRNIAVEATEEAKAERYPNR
IFAAEGDFSDADLSFVDFESFSSDDFSGNYN
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgcaaccgcttttgacaagcttcgtatcggtctggccactgctgacgacatt
cgtcgttggtcgtttggtgaggtcaagaagcccgaaacaatcaactaccgtaccctcaag
cctgagaaggacggcctctttggtgagcagatcttcggaccttctcgcgactgggaatgc
tcctgtggcaagtacaagcgtgtccgcttcaagggcatcgtctgtgagcgctgtggcgta
gaggtcaccaagtcatccgtgcgccgtgagcgcatgggtcacattgagttggccgctccc
gttacccacatctggtacttcaagggtgttcctagccgtctgggttacctcctggacatg
gcaccgaaggaccttgaaaaggtcatctacttcgctgcctacatggttatcgacatcgat
gaagagggccgtcatgctgacatgcctggtctggagaacgagcttcgtctcgagctgaag
acccttggagaccagcgcgatgctcgcattgctgaccgcatgcagcgtctggaaaacgac
ctcgcagctctcgaagctgaaggtgcaaagtcagaccagaagcgtcgtgcgaaggacgta
gctgagaaggaaatgtctcagatccgcaagtccatcgacgacgaaatcgctcgcctcgag
cgcgtctgggaagacttccgcaacctcaaggttggcgacctcaagcctgaagacgctgtc
ttcaacgagctggtagaccgctacggcctgtacttcgacgccttcatgggtgctgaagca
atcaagcgccgtctagaaaccttcgacctggaagcagaagcggaagctctgcgtctggaa
atcaccgaaggtaagggtgctaagaagatccgtgcgatcaagcgcctcaaggttgtatct
tccttcatcaacaccggaaccagccctgcggctatggttctcgatgttgttcccgttatc
ccaccagagcttcgccccatggttcagctcgacggtggacgctttgcgacctctgacctc
aacgacctttaccgtcgtgtgatcaaccgcaacaaccgtctgcgtcgtctgcttgacctg
ggtgctccagagatcatcgtgaacaacgaaaagcgcatgctgcaggaagcagttgacgcg
ctgttcgacaacggtcgtcgtggacgtccagttaccggaaccggtaaccgtgcgctcaag
tcactctctgacatgctcaagggtaagcagggtcgtttccgtcagaacctgcttggtaag
cgcgtggactactccggtcgttccgtgattatcgttggtcctcagctcaagctgcaccag
tgtggtctgcctaagcagatggcgctcgagctgttcaagccattcgtcatcaagcgtctg
atcgacctgagccacgctcagaacatcaagagcgccaagcgcatggttgagcgtagccgc
ccccaggtgtgggatgttctcgaagagatcatccgcgaacgtcctgttctgctgaaccgc
gcaccaaccctgcatcgtctcggtattcaggcatttgaacctcagctcattgaaggtaag
gctattcagcttcaccctctcgtgtgtgctgcgttcaacgctgacttcgacggtgaccag
atggctgttcaccttcctctgtcggttgaggctcaggccgaagcacgcatcttgatgctt
gcttcgaacaacatcctcaagccttcagacggtcgccccgtgaccctgcctactcaggac
atgatcattggtctgcaccacctcactaccgtgaaggaaggtgcaaccggtgaaggtcgc
gcattcagctcgattgctgaggcaatcctcgctcacgaccagcacacgctggacctcaac
gcgatggcacgcattcgtctgaatgatgttgtctttgctgagggtgaagcacctgagggt
tacaccggtggtcccgttttggtcaacaccactttgggtcaggcactgttcaacgaggct
ctgcccgctgactacccctacgtccagaaggttgcggacaagggaaccatctctgcaatc
gtcaacgacctcgctgagcgttaccccaagactgtggttgcggcgacccttgacaacatc
aaggacgctggtttccactgggctactcgctccggtgtgaccgttgcactctccgacgtt
ctgactcctccaaacaagcgcgaaatcgttgctggttacgagaagttggctgcgaaggtt
cagtctgagttcgagaagggcatgatcactgacaacgaacgtcgtcaggaactgatcaag
atctggaccgacgctaccgctgaagttgctgaagctatgcagaagaacttccctgcgaac
aacaccattaaccgcatggtcacctctggtgctcgtggtaactggctgcaggttcgtaac
atcgcgggtatgcgtggcctggtgaacaacccgaagggtgaaattatccctcgcccgatc
atcaactcttaccgtgaaggtctctccgttgtggagtacttcatcgctacccacggtgct
cgtaagggtctggctgacactgctctgcgtaccgcagactccggttacctcactcgtcgt
ctcgtcgacgtctcgcaggatgtcatcatccgcgaagaggactgtggcaccactaagggt
ctcgacctgccaatcgctgccgctaacgcagccggtgagctggttcgtgacgccaacgtg
gagaactccatctacgctcgtagcctcgctgcagacgcagtcgacgctcagggtaacgtc
atcgccaaggctggcgacgacgcaggtgacgttctgatcgacaccctcatcgctgctggc
atcaacgaggtcaaggtccgttcggtcctgacctgtgagtctgcaaccggtgtatgtgct
gcctgctacggccgttcacttgctaccggcaagctggtagacatcggtgaagccgtcggt
attatcgctgctcagtccattggtgaacctggaacccagctcaccatgcgtaccttccac
actggtggtaccgctggtgcagacgacattacccagggtctgccacgtgttcaggagctc
ttcgaagcacgtacccctaagggtgcatcgcctatcgctgagactgctggtcgcatcacc
atcgaagagaccgacaagagccgtaaggtcatcctcacaccagacaacggtgatgagcct
gtgatctaccccgtgctcaagcgttcgactctcctcgtatcagatggagaccacgttgaa
ctcggacagcagctccaggttggaaccgttgaccccaaggaagttctgcgcgtacagggc
gttcgcgccgtacagcagcacctcgttggtggcgtgcagggcgtataccgctcgcagggt
gtacctatccacgacaagcacattgaggtcatcgttcgtcagatgctccgcaaggtaact
gttgttgagcacggtgacaccgaactgctccccggtgagctcgttgaccgctcgcgttac
accgagctcaaccgtgctgcgctgcaggaaggcaagaagactgcttcggctcgtcaggaa
gtcctcggtattaccaaggcgtcgctggcaaccgagtcatggctgtcggctgcctccttc
caggagaccacccgtgttctcacccaggctgcgatggacggcaagtccgatcctctcgtc
ggccttaaggagaacgtcatcatcggtaagctcatccccgccggaaccggtcttgcgaag
taccgcaacatcgccgtcgaggcaaccgaggaagctaaggcagaacgctaccccaaccgc
atcttcgcggctgagggtgacttctctgacgctgacctgagctttgtcgacttcgagtct
ttctcgtcggatgacttctctggtaactacaactaa
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