Aurantimicrobium sp. INA4: AINA4_03290
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Entry
AINA4_03290 CDS
T10136
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
aut Aurantimicrobium sp. INA4
Brite
Enzymes [BR:
aut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AINA4_03290 (hrpA)
Messenger RNA biogenesis [BR:
aut03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AINA4_03290 (hrpA)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
BDU10408
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Position
complement(318752..322609)
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AA seq
1285 aa
AA seq
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MDAALITYPPDLPVSERREEILAAIRENQVVIIAGATGSGKTTQIPKMCLELGRTSIAHT
QPRRIAARAVAERIAEELKVELGGLVGYQVRFTDQASAETEVKVMTDGILLNALQRDRLL
KNYDTIIIDEAHERSLNVDFLLGYLKQILPQRPDLKVIITSATIAPESFATHFGNAPVIE
VSGRTYPIEIRYRPLVQDKVNSDDVDDDELADDKNTATAIPEHSVRDYLDGIIAALNELD
KEAPGDVLVFLSGETEIRDVQEAIEGHITAGRMKAGTEVLPLYGRLSAADQHKVFEPSKV
PGLRKRIILATNVAETSLTVPGIKYVIDAGTARISRYSPRAKVQRLPIEAISQASANQRS
GRCGRTSDGIAIRLYSEEDFERRPEFTDPEILRTNLASVILQAASLGLGDISQFPFLQTP
DSRGVKDGLDLLKELGAIQNTSGATTLTKIGHDLARLPIEPRFARMVLESRHHGVTREVM
AVVAGLTIQDPRERPLEKRPQADLSHARFTDPTSDFLTLLNLWNYLEEKQKELSSSAFRR
MCKAEFLNYLRVREWNDVYRQLRTLTKPLGLTLGEPKIDPDGIHKSLLAGLLSHIGLKQV
SDNKLADKRGPHSNPRKQQHEYLGSRNQKFVIFPGSALAKKPPAAVMSAELVETSRLFAR
TNAAIDPSWAEKIAGDLCKRSYSEPHWEKNQGAVVAYERVTLFGVTLVAHRRMQYSRIDP
ELCRELFIRHALVDGEWDSKQAFDRSNRALRRQLEELEERSRRRDILADDEVVFAFYDQR
IPADVFSTRTFEGWWKKEKNTNPDLLTMQRSDLLEETEAEHDEIEFPSEWVYGDQRLKLK
YRFEPGREDDGVTVEVPLPLLARLDPEPFDWLVPGLRLELITGLIKTLPKNIRRQVVPAA
DWAAKAAATLPETPQGNLLTSVAKALQSLSGALVSAADFDPLRLPDHLRMTYRVIGSTGK
NMGTDKNLEKLQRGLAEKTRDAVAEVAERVTSPLERDGLTSWDFDELPRTVDAQHGGNTV
RAYPALVVTNPGTARQEVNIRLMATEANQRREHPLGTRALAIAAVPSPAKYVQEHLTAAE
KLILTQSPYPSLNALIADAIAASVDSVLYSMREDGMIFQKPEFETLRDRVQGAIMDNIFD
AVSQTARILSAAKDAQKAMSQANPMTFLAQLTEEKAHLENLLQPGFISDAGLARLPRILI
YVRAITMRIQRMLEDSGRDRTASVELTQALSLYEAAGGKIPLAPNSPAHIVRARWMIEEF
RVSLFAQSLGTAEPISLQRIKKVLG
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgcactcatcacttacccccctgacttacccgtcagtgagcggcgcgaggag
atactggcagccatccgagagaaccaagtggtcattattgccggggccaccggctcggga
aaaactacccaaataccgaagatgtgcctggaacttggccgcacgagcattgcccacaca
caacccagacgtattgccgcccgcgctgtagcagagcgcattgcagaagaactcaaggtg
gaactcggtggtctcgttggctaccaagtgcgctttacagatcaagccagtgctgagacc
gaagttaaagtcatgaccgacggcattttgctcaatgccctacaacgcgatcgacttctc
aaaaactacgacaccatcatcatcgatgaagcccatgagcgcagcctcaacgttgacttc
cttctgggctatctcaagcagatacttcctcagcgacctgacctcaaagtcatcattact
tcagccaccattgccccggaaagctttgccactcatttcggtaatgctccggttattgaa
gtctcaggccgcacctaccccatcgaaattcgttaccgcccactcgtccaagacaaggtc
aatagtgatgacgtcgacgatgacgaactcgctgacgacaagaacacagcaacggccatc
ccggaacattcagtacgtgattacctcgacggcatcattgctgcactcaacgagctcgat
aaagaagcacctggagatgtcttggtgttcctctcgggtgagacagagattcgcgatgtt
caagaagccatagaaggccacatcactgccggccggatgaaggccggcaccgaagtgctg
ccactgtatggccgcctttctgcagcagatcaacacaaagtcttcgaaccaagcaaagtt
ccgggattaagaaaacgcatcattctggccacgaacgtggccgagaccagcctcacagtt
cctggcatcaaatacgtcatcgatgccggaacagcacgcatctccaggtattcgccgaga
gccaaggtgcagcgacttcccattgaggccatctcgcaagctagtgcgaaccagcgctct
ggccgttgtggtcgaaccagcgacggtatagcaatacgcctctactccgaagaggacttc
gagcgccgcccagaattcaccgaccccgaaatcttgcgcaccaatctcgcctcggtgatt
ctgcaagcggcctcactaggtttgggagacatctcccaattccccttcctgcaaacaccc
gattctcgtggtgtgaaagacggtcttgatctgctcaaagaactcggggccatccagaac
acctccggggcaaccacgctcaccaagattggtcacgatttagctcgcttgcccatagag
cctcgctttgcgcgcatggtacttgagtcacgccaccacggtgtcaccagagaagtcatg
gcggttgtggcagggctcactattcaagatccaagagagcgcccgctagaaaagcgacca
caagcagacctttcccatgcccgcttcacagaccccaccagtgacttcctcacattgttg
aacctatggaactatctggaagagaagcaaaaggaactgtcctcgagtgctttccgcagg
atgtgtaaagcagaattcctcaactacctgcgcgtgcgtgaatggaatgacgtctatcgg
caactcagaacacttaccaaacccctaggcctcaccttgggtgaacccaagattgatcca
gacggcattcacaagtctctgctggcaggattgctctcccatattggtctcaagcaagtc
agtgacaacaagctcgcagacaagcgtggccctcactcaaacccacgcaagcagcagcac
gaatacctgggatcacgaaaccagaaattcgtcatcttccctggctctgccctagccaag
aaaccccctgcagccgtgatgagtgcagagttggtagaaaccagcagactctttgccaga
accaacgcagcaatagatcccagctgggcagaaaagattgccggagacctgtgtaagcga
agctatagcgaaccgcactgggagaaaaaccaaggagccgttgttgcctatgagcgtgta
acgctctttggtgtcacgctcgttgcccaccgcagaatgcaatattcacggatcgaccct
gagctgtgccgtgaactgttcatccgccatgcactcgtcgatggcgaatgggattccaaa
caagctttcgacagaagcaaccgtgcgctccgcaggcaactagaagaactcgaagaacgt
tcacgaagaagagacatattggcagacgacgaagtcgtcttcgcgttctatgaccaacgc
atccctgcagatgtcttctccacccgaacctttgaaggctggtggaaaaaagaaaagaac
accaaccccgacctgctcaccatgcaacggtctgaccttctggaagaaacagaagcggag
catgacgagatcgaattcccctctgagtgggtctatggcgaccagcggctcaagctgaaa
tatcgcttcgaaccgggtcgagaagatgacggcgtcaccgttgaagttccgctgcctctc
ttggctcgtcttgatccagaaccgtttgactggctggttccaggacttcgtcttgagctc
attacaggactgatcaagacgctgccgaagaacattcgccgccaggtcgtcccggcagcg
gactgggcagccaaggctgctgccacgctgcctgagacaccgcagggcaacctcctcacc
tccgtggccaaagcactgcaaagtctcagcggagcactcgtcagcgcagctgactttgat
ccgctgagacttccagatcacttgcgcatgacctacagagtgattggcagcactggcaag
aacatgggcacggacaagaacctagagaaactccagcgaggtttggcagagaaaactagg
gatgcggttgctgaagtagcagagcgggtgacatcgccactcgaacgtgatggtctaact
agctgggactttgatgagctgccccgcaccgtggatgcacagcacggtggcaacacagtg
cgcgcataccccgcacttgttgtcaccaaccccggaacagcacgccaagaggtcaacatc
agactcatggccaccgaagctaaccagcgcagagaacaccctctgggcacgagagcactc
gcaatcgcggctgtaccttcaccagcaaagtatgttcaagaacatctcactgcagctgag
aaactcatcctcacccagagcccctatcccagccttaatgcactcatagctgacgccatt
gcagccagtgttgatagcgttctctactccatgcgtgaagacggcatgatcttccaaaag
ccagagtttgaaaccctgagggaccgcgtccagggcgccatcatggacaacatttttgat
gcagtttcccaaacagctcgaattctttccgcggccaaagatgcccagaaagctatgtct
caagcaaacccgatgacgttccttgcccaactcaccgaagaaaaggctcatttggaaaac
cttctccaaccaggcttcatcagcgacgccggtctcgcacgactacctcgcatcttgatt
tatgtccgcgccatcaccatgcgcattcagcgcatgctcgaagactcaggtcgagacaga
acggcatctgttgagctcacccaggcactctcactttatgaagcagcgggaggcaagatt
cctctggcccccaactcccctgcacacatcgtcagagcacggtggatgattgaagaattc
agggttagcctgtttgcccaatccctgggcacggcagaacccatctcactccagcgcatc
aagaaagtcttgggataa
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