Aurantimicrobium sp. INA4: AINA4_03520
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Entry
AINA4_03520 CDS
T10136
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aut Aurantimicrobium sp. INA4
Pathway
aut03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AINA4_03520 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aut03400
]
AINA4_03520 (mfd)
Enzymes [BR:
aut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AINA4_03520 (mfd)
DNA repair and recombination proteins [BR:
aut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AINA4_03520 (mfd)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BDU10431
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Position
348072..351668
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AA seq
1198 aa
AA seq
DB search
MVFHGLSRALSRTRNIAEALNYANKDADFSLVEGLNAPLLTSLIEARIVRGEPPVVLAVT
ATQRESERLAAALGSLLPHAMVAEFPAWETLPHERLSPSPEIVGRRFDAIRQLRDWDGNT
PLVMITSVRGVLQPIADNLAEVDPILVTVGSRGNDLHEIASRLVDLAYVRVDMVTRRGEF
AARGGILDVFPPVADHPIRVDFFGDEIDSIRAFSVADQRSLDGDLDTVALPPSRELLLTE
PVRQRAREMEHEFPGISQMLSKIAEGIAVEGMESLTPALVDNLVPMTNYLPKGSAIALLS
PERIATRAINLTETNREFLDAAWNAASAGAQAPIDLSAGDFLTITQLREHYSGGPWWTFS
AFQHGPEASEPLPEELDLDEILAVRINAEAVPSFAGNIDGAAEHVESLLKNNWTVIVAAE
GHGLVERAGQVLAERNLAARMVEQLPGELEPAVAYLVQASVEAGFELEEAKLAVISESEF
YGRAASYDARAPRKLASRRKNVVDPLKLEAGDIVVHETHGIGKFLELVQREVSTGGRNAV
KTMREYLVIEYAPSKRGYPGDKLYVPTDQLDQLTRYVGGESPALSKMGGSDWGQAKNKAR
KAVRDIAVELVKLYSARMASKGFAFSPDTPWQRELEEAFPYVETVDQLTTIDEVKADMER
PIPMDRLISGDVGFGKTEIAVRAAFKAVQDGKQVAILVPTTLLVKQHFETFQERFAGFPV
HLRALSRFQTDKEAKETLAGMAEGTVDVVIGTHRLLAQGVTFKDLGLVIIDEEQRFGVEH
KDALKKLKTNVDILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILTFVGPYSEKQA
AAAIRREILREGQVFFVHNRVSSINRVAAQIAELVPEARVGVAHGQLSEHQLEQVIIDFW
ERKFDVLVSTTIIETGLDIANANTLIVDRADKYGLSQLHQLRGRVGRGRERAYAYLFYDE
TTPLSETAHDRLNALAANNELGSGIQIALKDLEIRGAGNLLGGEQSGHIAGVGFDLYLRM
IGEAVSAFRVDVAEGQTELRLELPVDARIPDDYVNSERLRLEAYQKLSVASGPLSREEQI
DQVFEELSDRYGEPPAQVHNLIAISRLRRRAHQSSLSEVVVMGSNLRITPVDLPDSLQVR
LARMYPGAKYVPAARVMTVPLPEDVDLIAWTGNLLEAIFPVPAKSDASSSSDSDESAT
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atggtatttcacgggctttcgcgcgccctttcgcgtacccgaaatatcgctgaggctctg
aactacgccaacaaagatgcggatttttctcttgtagaaggtctcaatgctcctctgctc
acctccttgattgaggcccgcattgtccgcggcgagccacctgtggtcttggctgtcacc
gcaactcagcgtgaatctgaacgacttgctgccgctttaggaagtttgcttcctcacgcg
atggtggcggaattccctgcctgggaaaccctgccccatgagcgtctgagccccagccca
gaaattgtgggtcgacgtttcgatgccattcgccagttgcgggattgggacggcaatact
ccgcttgtcatgatcacctcagtcagaggtgtgctgcaaccaatcgccgacaatctcgcc
gaagtggaccccatccttgtcacggtgggctcacgcggaaatgatctgcacgagattgcc
tcacgcttagtggaccttgcttatgtccgggttgacatggtcacccgtcgaggtgagttt
gccgcgcgcgggggcatcttggatgttttccccccggtggcggaccatcccattcgtgtg
gacttcttcggtgatgagattgacagcattcgggcattctctgtcgctgaccaaagatcc
ctcgacggtgatctggacactgtcgcgctgccacccagtcgtgaacttctcctgactgaa
cccgtgcgtcaacgtgcccgggagatggagcacgaattcccgggtatatcccagatgctc
tccaagattgccgagggcattgcggtggagggaatggagtccctcaccccagcactggta
gacaaccttgtgccaatgacgaactatctgcccaagggttccgctatcgcactgctgtca
ccagaacgcatcgccactcgtgccatcaacctcaccgaaacgaatcgtgaattcctcgat
gcggcatggaatgcagcaagtgcgggcgcacaagcacccattgatctttcggcgggagat
ttcctcaccatcacacaactgcgtgaacactactcgggcggtccctggtggacattcagt
gccttccaacacggtcctgaagcgtcagaacctctgcctgaagagctcgaccttgatgag
atcctggctgtgcggatcaatgctgaagctgtccccagctttgccgggaacattgatggt
gctgctgaacacgtggagtccttactcaagaacaactggaccgtcatcgtagcggccgaa
ggtcacggactcgttgagcgcgcaggtcaggttttagctgaacgaaatcttgctgcccgc
atggttgagcagcttcctggcgagctcgaacccgcggtggcatacctcgttcaagcatct
gtggaggcagggtttgagctcgaggaagccaagcttgccgttatttccgaatcagagttt
tatggccgcgctgccagctatgacgccagagctcctcgcaaactggccagcaggcgcaag
aacgtggttgacccactcaaacttgaagctggcgacattgtggttcacgaaactcacgga
attggtaagttccttgagcttgttcagcgtgaagtttccaccggtggacgaaacgccgtg
aagacgatgcgtgagtacttagtaattgagtacgcacccagcaaacgaggttatcccggc
gacaaactgtatgtccccacagatcagcttgatcaactcactcgttatgttggcggagag
tctcccgcgctctccaagatgggtggaagtgactggggccaagccaagaataaagcacgc
aaggctgtccgcgacatcgcggttgagctcgtcaagctctacagcgcacgcatggcaagt
aaaggttttgcgttcagcccggataccccctggcagcgcgaactcgaagaagccttcccc
tatgtggagacagtcgatcaactcaccaccatcgacgaagtcaaggcagatatggagcgg
cccatccccatggaccgtcttatctcaggtgatgtgggttttggtaaaacagaaatcgcg
gttcgcgcagcgttcaaggctgtccaagatggcaagcaagttgccatcttggtgcccacc
acgctgctggtgaagcaacacttcgagaccttccaagaacgctttgccggattccccgtt
cacttacgtgcactgagtcgtttccaaacggataaggaagccaaagaaaccttggctggc
atggccgagggcaccgtggacgtggtcatcggaactcaccgcctcttagcccagggagtt
accttcaaagaccttggcctcgtcatcattgacgaagagcaacgctttggtgtggagcac
aaggatgcgctcaagaaactcaagaccaacgttgacattcttgccatgagtgcgaccccc
atacctcgcacactcgaaatggctgtgaccggtattcgtgaaatgtcgaccctggcaacg
ccgcctgaggatcgtcaccctattctcaccttcgtggggccctactccgagaagcaagcc
gccgctgcaatccgacgagaaatcctgcgcgaaggccaagtcttttttgtgcacaatcgt
gtctccagcatcaatagagtcgctgcgcagatagcagagcttgttcccgaagcgcgcgtg
ggcgttgctcacggtcaactctccgaacaccaactcgagcaagtcattatcgacttttgg
gaacgcaaattcgatgtgttggtctctaccaccatcattgagaccggtcttgatatcgcc
aatgccaacacgctcattgttgatcgagcagataaatatggcctgagccaattgcatcag
ttgcgtggtcgtgttggccgtggccgagaacgtgcctatgcctatctgttctatgacgaa
acaacgcccctgagtgaaacagcccacgaccggttgaacgcgctcgcagccaataacgaa
ctcggctccggaattcagattgctctcaaagacctcgagattcgtggtgccggtaacctt
ctcggcggagaacagtcaggccatattgcaggtgtgggcttcgacctctaccttcgcatg
attggcgaagcggtctctgccttccgcgtcgacgtcgcagaaggccagacagagcttcgc
ctcgaactgccggttgatgctcgcattcctgatgattatgtcaattcagagcgtttgcgt
ctggaggcgtatcagaagctgtcggttgccagtggtcccctctcacgtgaagaacagatt
gatcaggtcttcgaagaactctctgatcgctatggtgaaccaccagcccaggttcacaac
ctgatagctatttccaggcttcgtcgcagggctcaccagtccagcttgagtgaggttgtt
gtgatgggttccaacctgcgcattaccccggttgatcttccggactcgctgcaggtgaga
ttggcgaggatgtatccaggagcaaaatatgttcccgctgctcgggtgatgactgttcct
cttcctgaggatgttgatctgattgcctggacagggaacctgctcgaggctatcttcccc
gttccagcaaagtcagatgctagttcttcttccgatagtgacgagagcgccacataa
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