Actinotignum urinale: CJ184_003060
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Entry
CJ184_003060 CDS
T09101
Name
(GenBank) ATP-dependent helicase C-terminal domain-containing protein
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
auu
Actinotignum urinale
Brite
KEGG Orthology (KO) [BR:
auu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
auu03019
]
CJ184_003060
Enzymes [BR:
auu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CJ184_003060
Messenger RNA biogenesis [BR:
auu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CJ184_003060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_11
nSTAND3
AAA_22
AAA_19
T2SS-T3SS_pil_N
AAA_25
Motif
Other DBs
NCBI-ProteinID:
WIK59635
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All DBs
Position
747442..750372
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AA seq
976 aa
AA seq
DB search
MRENGVISRIHRLLEGESGQDGEVSARILPVAKHLNAIRESFPFCIIQAPPGTGKTTIVP
PLLAKWILEKSRVRNIDERNENVRTVDAGAEDALTPDARLEDSRSADSRPAVERVIVTQP
RRVAVRAVARRIAQLLGEKVGETVGYTVRAESVTSPRTLIEIMTPGVLLRHLQTNPELVG
ISAIVFDEVHERHLISDLTLACCLETASLREDLAIVVMSATMDTGKIEKIFAETLGTPPE
IVNISADIHPLHIRYCPPARGDEALGVISREGATGVRKEFLGHVARICVAALQETATGDV
LVFLPGVREVDNVVDNLRSLCGNTVDIYPLHGGMTAREQDKVLDGNSDTRRVIVSTAIAE
SSLTVPGVRIVVDGGLSREPREDIARGISGLVTVMESQASGIQRAGRAARLGPGIAYRCM
SENTWARLAAHSEPEIRIANLTDFVLNACVWAGSVDGIAQLPLLDQPPTVAVQAACHTLR
SLGIMDGEGTIPDGALYAQFPSDVRVARAMFETEHIAGRKRVAQYAAALADKPRIPGADF
TQWRKYVGSDWAYNTRRFEKELRRREREISDGAGGDYLPAFEPENSSRHASQGYLTEGQS
SQRNQTQSHSSRHHSSQGHQIQGDNEAGMSDTISTKNHNVATREKDSSPVKCDNATALAL
VIANAYPENIAQRRPRTSRYLLANGTGAVLPENSPLEGEEWLAIADISSSAGKSDALIRA
AVPLTKEMALSAGANLRRKETEIYVAGRTIHARTRELLGNIEISSLDMQKVDAAEARTYL
IRALKDGEIPLVFTDEAEKLRQRIEFLRRECGDSWPDVSNEFLITHVEEWAGIEIDAASR
GKEWASVTAEMLMRLLPWPLSMQIDELAPARIQVPTGDTRQVDYSKERPVVRLRVQEAFG
WKNAPLLAGGKVRLTLELLSPAQRPLAVTDDLRGFWEGSYVQVRAEMRGRYPRHPWPEDA
LNAQPTRHAKKKRDAN
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atgagagaaaacggcgtaatatcaaggatacatcggcttctcgaaggtgagtccgggcag
gatggagaggtttctgcgcggatattgcctgtagccaagcatctgaacgctattcgcgaa
tccttcccattttgcattattcaggcacctcctggaacgggaaaaacgacgattgtccca
ccacttctcgccaagtggattttggaaaaatctcgcgtgcgtaacattgatgagcgcaac
gaaaatgtgcgtactgtagatgcaggtgccgaagatgcgcttaccccagatgcgcgtctt
gaagattcccgttccgcagattcacgtccggcagtggaacgagtaatcgtcacccaaccg
cgcagggttgcggtgcgcgcggttgcccgtcgaatagcgcaacttttaggcgaaaaagtt
ggagaaaccgtgggatatacggttcgcgcagaaagcgtaacatcgccacgcacactcatt
gaaatcatgacacccggcgtacttctgcgccacctacaaacaaatcccgaacttgtggga
atttccgccatagttttcgacgaagtacatgagaggcacctgatctcggacctcaccctc
gcatgctgcttggaaacggcaagcctgcgggaggacctggctatcgtcgtcatgtcagca
acgatggacacgggaaaaattgaaaaaattttcgccgaaaccctgggaacaccgcccgag
atagtaaatatttccgccgacattcacccgttgcacattcgctactgtccgccagcgagg
ggagatgaagcgctgggcgtcatttcacgtgagggcgctacaggtgtgaggaaagaattt
ttgggacacgttgcgcgaatatgtgtagcagctttgcaagaaacagccacgggcgacgtt
cttgtattcctcccgggggtgcgcgaagtggataacgttgtggataacctgaggtcattg
tgcggaaatactgtggatatttatcctcttcatggaggaatgaccgcgcgtgagcaagat
aaagtgctcgacggaaatagcgacacccgtcgcgtcattgtttcaaccgcaatagccgaa
tcctcgctcaccgtgcctggagtgagaattgtggtggacgggggactcagccgagaacca
cgcgaagatatagcgcgaggaatatccgggctcgtgaccgtgatggaatcacaagcctca
ggaatacagcgcgccggacgcgcggctcgcctcggcccaggaatcgcctaccgttgcatg
agcgaaaacacctgggcgagactcgcagcccacagtgaaccagaaatacggatagcaaac
cttacagatttcgtgctcaacgcttgcgtatgggcaggaagcgtggatggaattgcgcaa
ctaccccttctcgatcaaccgccaaccgttgcagttcaggccgcttgccatacccttcgc
agtctgggaattatggatggggaaggaacaattccggatggtgccctctatgcgcaattc
cctagcgatgttcgagtcgcccgcgccatgtttgaaacagaacatattgcggggagaaaa
agggtagcgcaatatgccgcggcgctcgcggataagccacgcatacccggtgcagatttc
acacagtggagaaaatacgtgggatccgactgggcatataatactcggcgtttcgaaaaa
gaacttaggcgacgcgaaagggaaatctcagacggggcaggcggggattatttgccagca
ttcgagcccgaaaacagcagtcgtcacgcaagccaaggttacttaaccgaaggccaatca
agccaacgtaaccaaacccaaagccactcaagccgacaccactcaagccaaggtcaccaa
atccaaggcgataatgaagcaggaatgagcgacacaatcagcacaaaaaaccataacgtc
gcaacacgagaaaaagattcgtcgccggtgaaatgtgacaatgccactgccctcgccttg
gttatcgcaaacgcctatccagaaaatattgcacagcgacgccctcgcacctccaggtac
ctccttgcgaacggtacaggggccgttcttcctgaaaattcgccactagaaggggaagaa
tggcttgccatagccgatatttcgtccagtgcagggaaatccgatgcccttattcgcgca
gctgtgcccctcaccaaagagatggcattgagcgcaggcgcaaaccttcgtcgtaaagaa
acagaaatatatgtagcgggaagaacaatacacgcaagaacccgagaacttttgggaaac
atagagatatcgagtcttgatatgcaaaaggttgatgccgccgaagcccgcacatacctt
attcgcgcccttaaggacggagaaattccgctcgttttcaccgacgaagcagaaaaactc
cggcaacgcatagagttcttgcgacgcgaatgtggggatagttggcctgatgtgagcaac
gaatttttaataactcatgttgaagaatgggcggggatagagattgacgcagcatctcgc
ggaaaggagtgggcatctgtaacagcggagatgctcatgcggttattgccctggccactt
tccatgcagatcgacgaactcgcgcccgcgagaatccaggttccgacgggagacacgcgg
caagtggattacagcaaggagcgtcccgtggtgcgtttgcgtgtccaggaggcgtttggt
tggaaaaatgccccgcttcttgcgggtggaaaggtgcggctcaccttggagttgctttct
cccgcacagcgtccgcttgctgtaacggacgacttgcgcggtttttgggaggggagttat
gtgcaagttcgcgcggaaatgcgcggacgatacccgcgccatccctggccggaggacgct
cttaatgctcaaccgacgcgccacgcgaaaaagaaacgagacgcgaattag
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