Actinotignum urinale: CJ184_006130
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Entry
CJ184_006130 CDS
T09101
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
auu
Actinotignum urinale
Pathway
auu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
auu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CJ184_006130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
auu03019
]
CJ184_006130
03009 Ribosome biogenesis [BR:
auu03009
]
CJ184_006130
Enzymes [BR:
auu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CJ184_006130
Messenger RNA biogenesis [BR:
auu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CJ184_006130
Ribosome biogenesis [BR:
auu03009
]
Prokaryotic type
rRNA processing factors
CJ184_006130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
WIK58823
LinkDB
All DBs
Position
1453782..1456067
Genome browser
AA seq
761 aa
AA seq
DB search
MASHATAFEKRGTTMSPRFIQTNQSPFYSAVEDETAEPVTKYTMNFGLPIFQEPDSSDES
KIIRKITYIDIEDDEEEQPPKRERNRDAGAESKAEKKTSDKLARKESQKPDAKKDGFEQP
AEPTRRRRTMKTEPEDDVTAPLGSTRLAAKRARRRDRREVSSRRRGTITEVEYIARRENV
KREMLVREHDGLNQIAVLEDDVLVEHYVARRTQISMVGNVYLGRVQNVLPSMEAAFVDIG
KGRNAVLYAGEVNWEEAGITHKNPRIEQALKTGDPVLVQVTKDPIGHKGARLTAQITLAG
RHLVLVPGGNITGISRKLPEAERHRLKKILKEILPEEHGVIVRTAAEGATQEQLNDDIER
LVKSWKEIQRKSKQAKTAPVVLKSEPELAVRVVRDIFNEDFDKLKVQGKDTWETISEYVS
ELSPELHERLEHWESSEDIFEKYRVDEQLAKAFDRKVWLPSGGTLVIDRTEAMTVIDINT
GKYTGSGGSLEETVTLNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLEANRDLVLRRLIE
CLGRDRTRHQVAEVTSLGLVQMTRKRVGQGLVEAFSVPCEACDARGYIIQSTPVEKGEEP
VQETGTKKRRHRRAEKNSVKQDADKAAKREAASNAMNSIAAATHVDVPPAGKKDVEKDTQ
SEESTKRSEDTGQRTSSEETAPRRRRRRVVVSSGVVTPKRQDHSEEEAQHVETSSPTSGV
HAGTHSVKTRSRGVVSSGTISTSPAHEPVSVVTISHDGEDS
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atggcttctcatgccacggcgtttgaaaaacgtgggacaactatgtcaccacgttttatt
caaacgaaccaatcacccttttactcagctgttgaagatgaaacggccgagcccgtcact
aagtacaccatgaatttcgggctccccattttccaagaacccgattcatccgacgaatcc
aaaatcatccgaaaaatcacctatatagatatagaggacgacgaggaagaacaacctccc
aaacgcgaacgtaatcgtgacgcaggtgccgagagcaaagccgagaaaaaaacatcggat
aagttggcgcgtaaggaatcacaaaaacccgacgccaagaaagatggatttgaacagccc
gcagaaccgacacgtcgtcgtcgtacaatgaaaaccgaacccgaggacgacgttaccgct
cctctcggctcaacacgtttagcggctaaacgagcgcgcaggcgggaccggcgtgaagta
tcctcacgtagacgcggaaccattacggaagtcgaatatattgcacgccgcgaaaacgtt
aaacgcgaaatgcttgtgcgtgaacacgatgggctcaaccaaatagctgttcttgaagac
gatgtacttgtggaacattatgttgccaggcgtacccaaatttcgatggtgggaaacgtc
tatttggggcgcgtccaaaacgttcttccttctatggaagcggccttcgtggatattggg
aaagggcgcaacgccgttctatacgccggtgaagtgaactgggaagaagcaggaattacc
cacaaaaacccgcgcattgaacaggcgttgaaaaccggagatcccgtactggtgcaggtc
accaaggatccgattgggcataagggtgcgcgattaaccgcgcaaatcacccttgcgggg
cgtcacctcgtcctggtgcccggaggaaacattaccggcatttcccgcaaacttccagaa
gcggagcgccatcgcctcaagaaaatattgaaggaaattcttcctgaagaacacggtgtg
attgtgcgcaccgcagctgaaggcgcaactcaggaacagcttaatgacgacattgaacgg
ctcgtaaaatcctggaaggaaattcagcgtaagagcaagcaggcaaaaaccgcgcctgtc
gttttgaagagcgaaccggagcttgccgtgcgtgtggttcgcgatatcttcaacgaagat
ttcgataaactcaaggtccagggcaaggacacgtgggaaacaatttccgaatacgtctcc
gagttgtcgccggaacttcatgagcgcctagagcactgggaatcttccgaagatattttt
gaaaagtatcgtgtcgacgagcaactcgcaaaagccttcgatcgtaaagtttggttgccc
agtggcggaacgcttgttatcgaccgcaccgaagctatgacggttattgatattaatacc
ggaaaatacacgggaagtggcggttcgctggaagaaaccgtgacgctcaataatttggaa
gcggctgaagaaatcgtcaggcagcttcgccttcgcgatattggcggaattatcgttatt
gactttatcgacatggttttggaagccaatcgcgatcttgtgttgaggcgccttatcgaa
tgtcttgggcgcgatcgcactcgccaccaggttgcagaagtgacctctctgggtcttgtt
caaatgacacgtaaacgtgtggggcagggccttgtggaagcattctctgttccgtgcgag
gcgtgtgatgcacgaggctacattattcaaagtaccccggtagaaaagggagaggagccc
gttcaggaaacggggacgaagaaacgtcgtcatcgtcgtgcagaaaagaactcggtgaag
caagatgccgataaggccgcaaagagagaagcggcctcgaacgccatgaattctattgct
gcggccacacatgtagatgtgccacccgcaggaaagaaggacgtcgagaaggatacgcaa
tccgaagaatcaaccaagcgctcagaagataccggccagcggacgtcatctgaggaaacc
gcaccacgcagaaggcgcaggcgtgttgtggtgagcagcggtgtggttactcctaaacgc
caagatcattcggaagaagaagcgcaacatgtcgagacctcctctccgacatcgggtgtt
cacgcgggtacacattctgtgaaaacgcggagccgtggtgttgtgagtagcggaacgatt
tcgacgtcacccgcccatgaacccgtttctgttgtgacaatttcacacgacggagaagat
tcatag
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