Alteromonas ulvae: ACOJR9_04275
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Entry
ACOJR9_04275 CDS
T11410
Symbol
sbcD
Name
(GenBank) exonuclease subunit SbcD
KO
K03547
DNA repair protein SbcD/Mre11
Organism
auv Alteromonas ulvae
Brite
KEGG Orthology (KO) [BR:
auv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
auv03400
]
ACOJR9_04275 (sbcD)
DNA repair and recombination proteins [BR:
auv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ACOJR9_04275 (sbcD)
Archaeal homologous recombinant proteins
ACOJR9_04275 (sbcD)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
SbcD_C
Metallophos
Metallophos_2
Pertussis_S2S3
Motif
Other DBs
NCBI-ProteinID:
XQN01338
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Position
969985..971409
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AA seq
474 aa
AA seq
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MKILHTSDWHLGQSFFTKSRKFEHDAFLKWLLNEVDIHEVDAVIVAGDVFDTGTPPSYAR
ELYHAFIGALQGRQCTLVVLGGNHDSVSVLNESKSLLKYLNSHVIASTFGDSAEQVIALK
NRADEVGAILCAVPFIRPKDVLVSTAGQSALDKRHALGEAIKQHYAMLYQQAIALRHSIA
AQTQQQAETIPIVATGHLTALGVSQSESVRDIYIGTLEGFDAGGFPPADYIALGHIHRPQ
KVAKTEHIRYSGSPIPLSFDELNTQKQVVMVEFTLGQTAITPIPVPRFQAMEVIKGDLAS
IELAINNSIAIADATELSPVWLCIEVETQDYLTDLQQRIQTLLEGKNAEILQLKRVRKSA
TKSLSETKNRQLSELSVKEVFEARLALEDFDSLELNESPELNDSLELNDSLERDNSPEPD
ESTSTQAPSANRKARITQLFSEAVERVRANDEDNDALVNNTAATSNKANKEQAK
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatattgcatacgtctgactggcatttagggcagagcttttttacaaaaagccga
aagttcgaacatgacgcctttttgaaatggctgctaaatgaagtcgacattcatgaagta
gatgcagtaattgtggcgggcgatgtgtttgatacaggtacacctcccagctacgcccga
gagctttatcatgcctttattggtgcgctgcaaggtcgtcaatgcacccttgttgtactg
gggggaaaccacgattctgtgtctgtactcaacgagagtaaatcgctgcttaagtattta
aatagtcacgttatcgccagcacgtttggtgatagcgccgaacaggttattgcgcttaaa
aatagggctgatgaggttggcgctattttatgtgccgtgccatttattcgcccaaaagat
gtgttggtgagtacagcaggacaaagtgcactagataagcgtcatgcgttgggggaggca
ataaagcagcattacgcaatgctgtatcagcaagccattgcgcttcgacattcgattgca
gcacaaacgcagcagcaggccgagactattcccattgttgctaccggccatttaaccgcg
ctgggagtgagtcagtctgaaagcgtgcgggatatttatatcggtacgttagaagggttt
gatgcaggtggctttccgccagccgattatattgcgttaggccatatccaccgcccacaa
aaagtggctaaaaccgaacatattcgctactccggctcgccaatacccttaagctttgat
gaactcaatacgcaaaagcaggttgttatggtggagtttacattaggccaaaccgctatc
acgccaatccccgtgccgcgctttcaagccatggaggtgatcaaaggagatttagcgagt
attgagttagccattaataatagcatcgctattgctgatgccacagagctttcccccgtg
tggctgtgtattgaagttgaaactcaagattacctcacggatttgcaacagcgtatacag
accttgctagaaggtaaaaacgccgaaattttgcaactcaaacgtgtgagaaaaagcgcc
actaaaagcttaagtgaaacaaaaaacaggcaactgagcgagctgtcggtaaaagaggta
tttgaggcgcggttggccctcgaagattttgacagccttgagctgaacgagagccctgag
ctgaacgacagccttgagctgaacgacagccttgagcgggataacagccctgagccagat
gaaagcacatccactcaagcaccatcagcaaaccgtaaagcgcgcataacacaattgttt
tcagaggcagtagagcgagttcgcgctaatgatgaggataatgacgctcttgttaataac
actgcagctactagcaataaagcaaataaggagcaggcgaagtga
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