Alteromonas ulvae: ACOJR9_04860
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Entry
ACOJR9_04860 CDS
T11410
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
auv Alteromonas ulvae
Pathway
auv03030
DNA replication
auv03430
Mismatch repair
auv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
auv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACOJR9_04860 (dnaE)
03430 Mismatch repair
ACOJR9_04860 (dnaE)
03440 Homologous recombination
ACOJR9_04860 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
auv03032
]
ACOJR9_04860 (dnaE)
03400 DNA repair and recombination proteins [BR:
auv03400
]
ACOJR9_04860 (dnaE)
Enzymes [BR:
auv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ACOJR9_04860 (dnaE)
DNA replication proteins [BR:
auv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ACOJR9_04860 (dnaE)
DNA repair and recombination proteins [BR:
auv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ACOJR9_04860 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
XQN01443
LinkDB
All DBs
Position
1104362..1107826
Genome browser
AA seq
1154 aa
AA seq
DB search
MSSPFIHLRVHSDYSMMDGLNKVKPILSKVAELEMPAVAITDQMNMCGLVKFYSEAHSKG
IKPIIGTDFWVTNEVFGDEPFRLTLLAMNNEGYKNITVLISKAYLRGHLAHRAVIDQSWL
AEHNEGIIVLSGGLHGDIGVGLTKNNTKLLGASIQFYKTNFQDRFYVELVRTGRVGEEDY
LHRAVEFAYQQDLPVVATNEVCFIDREGFDAHEIRVCIHDGYTLDDTRRPKRYSEQQYLR
TADEMVDLFSDIPEAIENTVEIAKRCNVTVRLNEYFLPQFPTGGMTTEDFLVKVSEEGLE
DRLVFLFPDESERKEKRPEYDDRLRIELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGPG
RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAEL
YGRQAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPDPGMTLEKAFKAEPQL
LQVYEQDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPTTITDFSPLYCDDQGNNPVTQF
DKNDVETAGLVKFDFLGLRTLTIIQWAIDMVKEGKNIDIDISAIPLADPKSFRTLQNAET
TAVFQLESRGMKELIKRLRPDSFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAISYPD
KDYQHECLEVILEPTYGIILYQEQVMQIAQEMAGYSLGGADLLRRAMGKKKPEEMAKQRG
AFAEGAKGNNIDPDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKVHYPAEFMAA
VMSADMDNTDKIVTLVDECERMGIEILPPDLNAGKYKFTVDSKGRIVYGIGAIKGVGEGP
IEAIIDARDAHGEFKDLFEFCAKIDTKRVNKRVLEKLVLAGAMDNLGPHRATLMATLPEA
LAAAGQHAKAESFGQSDMFGLLTTEPDEVEQAFADVPEWPEKVWLEGEKDTLGLYLTGHP
INQYADELRYYTDGRLVDLKPTNKDQMSSAVGLVLGVRVMTNKRGRRWAIVTLDDKSARM
EARFFPDTYEQFESVLETDKILLIKGQVSFDDFSGGNTITARDVMDIVQAREKNAKALVL
NVDTQSLETKKMSQMQSILQAFNGGSCPVQIAVTHPDAEATLACGVKWYVTPEDQLLHEL
KQCLGEKAVSILYH
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcgccatttattcatttacgggttcacagtgattattcaatgatggatgggctt
aacaaggttaagcccattttgagcaaagtggctgagcttgaaatgcctgcggttgctatc
accgaccaaatgaatatgtgtggcctcgttaagttctattctgaagcgcattcaaagggt
attaaacccatcattggtactgacttctgggtaacgaacgaggtgtttggcgacgagcca
ttcaggctgacgctattagcgatgaataacgagggatataagaacataaccgttctaata
tccaaagcctatttaagaggccaccttgctcatcgcgcggttatcgaccagtcttggctt
gccgagcacaatgaaggcattatcgtgctttctggtggactacacggcgatattggggtc
ggattaaccaaaaataatacaaaacttctcggtgcttcaattcagttctacaaaaccaac
tttcaagaccgtttttatgtagagctggttcgtactggacgggtaggagaagaagactat
cttcatcgtgcagtagagtttgcctatcagcaagacttgcccgtagtagcgaccaatgaa
gtatgctttattgatagagaaggttttgatgcgcatgaaattcgcgtgtgcattcacgat
gggtataccttagacgacacccgtcgtccaaagcgctatagcgagcagcagtacctgcga
actgccgacgaaatggtggacttatttagcgatattccagaagccatagaaaacaccgtg
gaaatagccaagcgatgcaacgttaccgttcggttaaatgagtacttcttacctcagttt
cccaccggtggcatgaccacagaagatttcttggtcaaagtatcagaggaaggccttgaa
gataggctggtttttttatttcctgatgagagtgaacgcaaggaaaagcgcccggaatat
gacgaccgacttcgaatagagctcgacgttatcaaccaaatgggatttcctggttacttt
cttatcgtgatggaatttatccagtggagtaaagataacggtatacccgttggaccagga
cgtggttcaggtgccggctcattagtggcttatgccctaaaaattaccgacctcgacccc
cttgaattcgatttgctcttcgagcgatttttgaaccctgaacgtgtatctatgcccgat
tttgacgttgatttctgcatggatagacgggatgaagttattgaccatgttgccgaactc
tatggtcgtcaagcagtatcgcaaattataaccttcggtaccatggcagcgaaagccgta
gtgcgtgacgtcggtagggtacttgggcatccatatggcttcgttgatagaatttctaag
cttattccgcctgatccgggtatgactctggaaaaagcattcaaagcggagccgcagctt
ctccaagtatacgagcaagacgaagaggtaaaagacctcattgatatggcgcgtatttta
gaaggtgttacccgtaacgcagggaaacacgccggtggtgttgttattgcgcctaccact
attaccgacttttcacccttgtactgcgatgaccaagggaacaaccctgtcacccagttt
gataagaacgatgtagagaccgcgggattagtcaaatttgacttcttggggctgcgaaca
ctgaccatcattcagtgggctatcgatatggtaaaagaaggcaaaaatatcgatatagac
atttctgctattcctcttgctgatcctaagagctttcgcacacttcaaaatgctgaaact
acggcggtttttcagctcgaatctcgcggtatgaaagagcttatcaagcgccttagaccc
gatagcttcgaagatattattgcactggtggccttattccggccaggtccactacagtct
ggaatggtagataactttatcgatcgtaagcacggtagagaagcgatttcttatcccgat
aaagattatcagcacgaatgcttggaagttattctagaacctacctacggtattatattg
taccaagagcaggtaatgcagattgcccaagaaatggcgggctactcccttggtggcgcc
gatttactgcgtcgtgcaatgggtaagaaaaagccagaggaaatggctaagcagcggggc
gcgtttgctgaaggggcaaaaggcaacaatattgaccccgatttagccatgaaaatcttc
gacttggtagaaaagtttgcaggctacggttttaacaaatcacactctgcggcgtatgca
ttggtgtcataccaaacgctgtggctaaaagtacattatcctgccgaatttatggccgcc
gtaatgtctgcggatatggataacaccgacaaaattgttaccctagtggatgaatgcgag
cgtatgggtattgaaattctgccaccagatttaaacgccggtaaatataaattcaccgtt
gatagtaaagggcgcattgtttatggcattggagcgataaaaggggttggcgaaggccca
attgaggctattattgacgctcgagatgcccacggtgaatttaaagaccttttcgaattc
tgtgcaaaaattgacaccaagcgggtaaataagcgggtactagaaaagttagtattagct
ggcgcgatggataatttaggtccacatcgagcgactctgatggctacgctgccagaggca
ctcgctgctgcgggtcagcacgcaaaagcagagtcatttggacagtctgatatgtttggc
ctattgaccactgagcccgatgaagtggagcaggcctttgctgacgttcccgagtggcct
gaaaaagtgtggcttgaaggtgaaaaagataccttaggcttatatttaaccggtcaccct
atcaatcaatatgctgacgaacttcgctattataccgatggtcgtctagtagacctaaaa
ccaacaaataaagatcaaatgtccagtgccgtaggtcttgttcttggcgtaagggttatg
acaaacaaacgaggacgtcgctgggcaatagtgacactggatgataagagtgccagaatg
gaagctcgtttttttcccgatacgtacgaacagttcgaaagtgtgctagaaaccgataaa
atattgctcataaagggacaggtcagctttgatgatttctctgggggcaatacaatcacc
gcccgtgatgtaatggacattgttcaggcacgtgagaaaaatgcgaaagcgctggtgtta
aacgttgatacacagtcgcttgaaacgaagaaaatgagtcagatgcaatctattttgcag
gcatttaatggcggtagttgtcctgttcaaatagcggttacacatccagacgctgaggcc
acgttagcctgtggtgtaaaatggtacgtgaccccagaggatcaacttttgcacgaactc
aaacagtgtttgggagaaaaagccgtttcaattctctaccattaa
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