Alteromonas ulvae: ACOJR9_11435
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Entry
ACOJR9_11435 CDS
T11410
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
auv Alteromonas ulvae
Pathway
auv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
auv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
ACOJR9_11435 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
auv03400
]
ACOJR9_11435 (recD)
Enzymes [BR:
auv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
ACOJR9_11435 (recD)
DNA repair and recombination proteins [BR:
auv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ACOJR9_11435 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
NAT10_TcmA_helicase
UvrD-helicase
SH3_13
SLFN-g3_helicase
AAA_22
PhoH
UvrD_C
DEAD
RecD_N
ResIII
AAA_12
CbiA
Flavi_DEAD
FXR_C3
TrwB_AAD_bind
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
XQN02403
LinkDB
All DBs
Position
complement(2606412..2608439)
Genome browser
AA seq
675 aa
AA seq
DB search
MKINKNALFEQLFGIEAIDKFIASEFTPTSVLSEQENTTWLHLLVLLSFMQRHGNSCVKL
SDVAGKTLFGEDVSENRSVSNSTHNSPSSNNGQNDTQKKGYTFEELTPLIGVVKKALSDE
RIGQLFVYNNGLFYSRRYYEFEQEVAQGVVARTAFTPLSDEAYSKVKALWPAMFVKAPSI
AASQEPSQELALSSEQDWQQVAVAKSIVQKFSVINGGPGTGKTYTVLRLLLALQACEDNI
NIVLAAPTGKAQQRMTESISDSIAGLRGKIDDGVLNRVPTQAVTIHRLLGLREHTVSTKY
NRQNQLSLDVLIVDEASMVDLALMTRIIRALPEHARLYFIGDAEQLPAVELGNVLEQLVE
TNDDLVNSDDKMLGAVPTALRQHIATLCPHLPLLPVDEDAKTWVHTLRAPQRFKGQVAAV
ATAIQKGEPQGALSALNNAVNNAKNAESMADIPVLNDGVHLWPEDWVSDKKLRKMAVQSF
MPIFDATNACDALRRLNQVRWLTPVRKGNMGVERLNSLVFDAIKHKITRREGNFYQGQPI
MIVKNNHPQRLSNGEVGIIWPDSSGKLLAWFEAENDELRHISLSRVPQFETVYAMTIHKS
QGSEFSHVVLLLPKPETEKAAGLFHRGLVYTGLTRAKKGCLIIANSPTFSDMVSRVDKRY
SGLANAIRDAAIDEK
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcaataaaaatgcattgtttgaacagctatttggtattgaggccatcgataaa
tttatagcttctgaatttacacccacttctgtgcttagtgagcaagaaaatacaacgtgg
ctgcatcttttggttttgttgtcgtttatgcagcgccatggaaacagctgtgtgaagctt
agcgatgtagcaggcaaaaccttgtttggcgaagatgtgagtgaaaatagaagtgtgagt
aatagcactcataactcaccatcaagtaacaatggccaaaacgatacgcaaaagaaaggg
tacacgtttgaagaactgacaccgcttatcggtgtggtgaaaaaagcgttaagtgacgaa
cgcattggtcagctgtttgtttataacaacggtctgttttacagccgcagatattatgag
tttgaacaagaagtcgcgcagggcgtggttgctagaaccgcctttacccccttatctgat
gaggcatattcaaaggtaaaagccttgtggcccgccatgtttgtcaaagcgccatcaatt
gcggcttcacaagagcctagccaagagctagcgcttagcagcgagcaagactggcagcag
gtagccgttgctaaaagtattgtacaaaaatttagcgtaattaacggtggcccaggaaca
ggaaaaacctacaccgtactgcgcttgttgctagcccttcaagcctgcgaggacaacatc
aatatagtgttggcggcgcctacaggaaaagcgcagcagcgtatgacggaatcaattagc
gacagtattgctggcttgaggggaaaaattgatgacggtgtgttaaaccgcgttcccaca
caagcagtaactattcaccggttgttagggctgcgagaacacacggtatcaacaaagtac
aacaggcaaaatcagctttcacttgatgtattaattgtggatgaggccagtatggtcgac
cttgccctaatgacgcgaataataagagcgctacctgaacatgcccgtctgtattttatt
ggagatgctgagcagttgcccgctgtagagctagggaacgtgttagagcaattggtagaa
acgaatgacgacttagttaattcagacgacaaaatgcttggcgccgtgcccactgcgctg
cgtcagcatatcgctaccctatgcccccatttacctttattacccgtagatgaagatgcg
aaaacatgggtacatacgctgcgagcaccacaacgatttaaagggcaagtggcggcagtg
gcgaccgctatccaaaaaggtgaaccgcagggtgccttgagcgcgttaaataacgcggta
aataatgcaaaaaacgcagaatcaatggctgatataccagtactgaacgatggtgttcat
ttatggccagaagattgggtaagcgacaaaaagctgcgcaaaatggccgtgcaaagtttt
atgcctatttttgatgccaccaatgcatgtgatgcgctgcgtcgactaaaccaagtcagg
tggttaacgccggtgcgcaaaggcaacatgggagttgagcgtttaaattcattggttttt
gatgctattaaacacaaaattacacggcgagaaggcaatttctatcaaggtcagcccatc
atgatagttaaaaataatcaccctcagcgcctatccaatggtgaagttggtattatttgg
ccagacagtagtggaaagttactggcgtggtttgaagctgagaatgatgagctaaggcat
atttccttatctcgcgtgccccagtttgaaaccgtttacgcaatgaccatccataagtct
caaggttctgagttctctcacgtggtgctgctgcttcctaagcctgaaactgaaaaggct
gcagggttgtttcaccgtggcctggtatacaccgggcttacacgagctaaaaagggatgt
ttgataattgccaatagtcctacctttagtgacatggtatcgagagtagacaagcgatat
tccggcttggcaaacgccattcgcgacgccgccattgatgaaaagtag
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