Aurantimicrobium sp. MWH-Uga1: AURUGA1_00915
Help
Entry
AURUGA1_00915 CDS
T05539
Symbol
hrdB
Name
(GenBank) RNA polymerase principal sigma factor HrdB
KO
K03086
RNA polymerase primary sigma factor
Organism
auw
Aurantimicrobium sp. MWH-Uga1
Brite
KEGG Orthology (KO) [BR:
auw00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AURUGA1_00915 (hrdB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
auw03021
]
AURUGA1_00915 (hrdB)
Transcription machinery [BR:
auw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AURUGA1_00915 (hrdB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AXE54601
UniProt:
A0A344W314
LinkDB
All DBs
Position
complement(904014..905816)
Genome browser
AA seq
600 aa
AA seq
DB search
MATEKTNPKPKSLIASLFGKSKNAVVEPASESTASVKAPAAKKTVPATPAKTPAKASVKA
PTAKAPAAKASTPKAPVKATAKQTAAKAPAKAAAKAPAKAAPKATSAKTPAKAPAAKAAA
KPVAKTETQAASKSTANSATAATKTPAAKTADKAPVAKSAPQATAPKVSAGAAKSQPVEE
AKPAAKAKKPTKAELEKMANALLAEEEAPAVIAPKKSRGKAKAADEDAEDEVDAEELDDD
VVIEAVVVEVVEDDVLEDDEEKPNRPAVTEEPLPTGAIVLSMADDDDDIPVISTAITGAT
ADPVKDYLKQIGKVPLLNAVEEVELALRIEAGLFAEDRLATKKNLPKQLERELRWVARDG
QRAKSHLLGANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYAT
WWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELSRELDMTPE
KVVEVQKYGREPISLHTPLGEDGDSEFGDLIEDTEAVVPADAVGFTMLQKQLESLLDSLS
EREAGVIRMRFGLGDGIPKTLDQIGDTFGVTRERIRQIESKTMAKLRHPSRSQSLRDYLE
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagaaaagacaaaccccaaaccaaagtcgctgattgcgtcgttatttgggaag
tccaaaaacgctgttgtcgagcctgcctcagaaagtactgcatcagtgaaggctcctgcc
gcgaagaaaacagttcctgcaacacctgccaagactcctgctaaggcctctgttaaagca
cccacagccaaagcgcctgctgctaaagcttccactcctaaagcaccagtgaaagctact
gcaaagcaaaccgctgctaaagcgcctgcaaaggcagctgctaaagcacccgcgaaagct
gccccaaaagcaacttcagctaaaactcccgcaaaagcacccgccgctaaagctgctgca
aagcctgttgccaagacagagacccaagctgcttcaaagtcaaccgctaacagcgctact
gcagcaaccaaaactcctgcagcaaaaacagcggacaaagcaccagttgccaaatctgca
cctcaggctactgcgccgaaagtctctgcaggggctgcaaagtctcagccagttgaagaa
gctaagcctgcagcaaaagcaaagaagccgactaaagcagagttagagaaaatggcaaac
gctcttcttgccgaggaggaagctccagctgtaatcgcacccaagaagagccgcggtaaa
gctaaagcagctgacgaggatgctgaagacgaagtcgatgcagaagagctagacgacgac
gttgtgatcgaagcagttgttgtcgaagtcgttgaggatgatgttctcgaagatgacgaa
gaaaagccaaaccgtccagccgtaacagaagagccattgcctaccggtgcaatcgtgctg
tcgatggctgatgatgacgatgacattcctgtaatttcaacagccatcaccggtgctaca
gctgatccggttaaggactacctcaagcaaattggtaaagtccctcttctcaatgcagtc
gaagaggttgaactagcactgcgcatcgaagcgggactcttcgctgaagaccgcctcgca
accaaaaagaatcttcccaagcagctcgaacgcgaacttcgctgggttgcacgtgacgga
cagcgcgcaaagagccacttgttgggcgcaaatctccgtctagttgtatcgctggccaag
cgttacaccggccgtggaatgcaattcttagacctcattcaagagggaaacctaggtttg
attcgtgctgttgagaagtttgactacaccaagggtttcaagttctccacttatgcaacc
tggtggattcgtcaagcaatcacccgcgcaatggcggaccaggccagaaccattcgtatt
cctgtccacatggttgaagtaattaacaagcttgctcgtgtccagcgtcaaatgcttcaa
gatcttggccgagaaccaactcctgaagaactctcgcgcgaattagatatgactcctgag
aaggttgtcgaggttcagaagtacgggcgtgagcccatttctcttcacacgccactgggt
gaagatggagatagtgagtttggcgacctcattgaagataccgaagcagttgttcccgct
gacgctgttggattcacgatgcttcaaaagcagctcgagtctcttcttgattcactttct
gagcgcgaagctggggttattcgtatgcgctttggtctcggtgacggaattcctaaaacc
ctcgatcaaattggtgacaccttcggagtcacccgtgagcgaatccgccagattgaatca
aagacgatggcgaaattacgccacccatctcgttctcagtcactgcgtgattacctcgaa
taa
DBGET
integrated database retrieval system
