Aurantimicrobium sp. MWH-Uga1: AURUGA1_01207
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Entry
AURUGA1_01207 CDS
T05539
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
auw
Aurantimicrobium sp. MWH-Uga1
Pathway
auw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
auw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AURUGA1_01207
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
auw03021
]
AURUGA1_01207
03019 Messenger RNA biogenesis [BR:
auw03019
]
AURUGA1_01207
Transcription machinery [BR:
auw03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AURUGA1_01207
Messenger RNA biogenesis [BR:
auw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AURUGA1_01207
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
AAA_25
Spore_III_AA
NACHT
ResIII
ATPase_2
PIP5K
VWA_2
Motif
Other DBs
NCBI-ProteinID:
AXE54884
LinkDB
All DBs
Position
complement(1202078..1203856)
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AA seq
592 aa
AA seq
DB search
MSENSFEETPAAEAAPRKRTSRRATVTAPVSSADAVSGAVSVSASQHVNAGDAGVPALAP
ALQASAEEAPRRGRGRPSKKAVEAAETSAPEADSPAEASEAGPRRGRGRGRNTEAAENTG
DAEQNSGSTEGAGDSDNTDGDRPNRNRNRNRNRRDRNDRVEGENPRNNGPESEGEERNDR
YDRNGRNNRQRDRRRGGRMGDEVEPEILEDDVLIPIAGILDVLDNYAFVRTSGYLPGNND
VYVSLGQVKKYNLRKGDAIIGAIKQPREGEGFGRQKYNALVKIDSINGQTIEEAATRVDF
QSLTPLYPQERMRLETESSKITGRIIDLVSPIGKGQRGLIVAPPKAGKTIVMQQIANAIA
QNNPEVHLMVVLVDERPEEVTDMERSVKGEVIASTFDRPAEDHTMVAELAIERAKRLVEL
GQDVVVLLDSITRLGRAYNLAAPASGRILSGGVDAAALYPPKKFFGAARNIENGGSLTII
ASALVETGSKMDEVIFEEFKGTGNMELRLSRALADKRIFPSVDVNASGTRREEMLMGADE
VKVTWKLRRALAGLDQQQALESVVGKLKETATNVEFLMLMQKSNAGSASKED
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagaactcattcgaagaaacccccgcagcagaagctgcaccccgtaagcgcact
tcacgccgcgcaacagtaactgcccccgtgtcatctgctgacgcagtttctggcgcagtg
tctgtcagtgcctcacagcacgtcaacgccggcgacgctggtgttcctgcgcttgcccct
gcgttgcaggcaagcgctgaggaagcaccacgccgcggacgcggacgcccctcaaagaag
gctgttgaggcagctgaaacgtcagcacctgaagcagattcacctgcagaagcaagcgag
gctggcccacgtcgtggacgtggccgaggtcgcaacacagaagcagccgagaataccggt
gatgccgagcagaactctggttccactgagggagctggcgacagcgataacaccgacggc
gatcgcccaaaccgtaaccgtaaccgcaaccgcaaccgtcgtgaccgtaacgaccgtgta
gagggagaaaacccccgcaacaacggacccgaatctgagggtgaagaacgcaacgatcgt
tacgaccgcaacggccgtaacaaccgtcaacgtgaccgccgccgcggtggccgcatgggc
gacgaggtagaaccagaaattctcgaagacgatgtcctgattcctattgcaggcatcttg
gacgtactggataactatgcattcgtgcgtacttccggataccttcctggcaacaacgac
gtctatgtctcacttggacaggtcaagaagtacaaccttcgcaagggggacgccattatt
ggtgctatcaagcagccacgtgaaggcgaaggctttggtcgtcagaagtacaacgcactc
gtcaagattgattccatcaatggccagaccattgaagaagcagcaacgcgcgttgacttc
cagtccttgactcctctttacccacaagagcgtatgcgcctggagaccgaatcttccaag
atcactggtcgcattatcgacttggtttctcccattggtaagggacagcgtggtctgatt
gttgccccacccaaggctggcaagaccatcgttatgcagcagattgctaacgcaatcgct
cagaacaaccccgaggttcacctcatggttgttctggttgacgagcgtcctgaggaagtt
accgacatggaacgcagcgtcaagggtgaagttattgcctcaacgttcgaccgtcctgca
gaagaccacaccatggtggcagagctcgctatcgagcgcgcaaagcgcctcgtcgagctc
ggccaggatgttgttgttctgcttgactccattacccgcctgggacgcgcatacaacctg
gcagctcctgcatcaggtcgtattctctctggtggtgttgatgcggctgcgttgtaccca
cccaagaagttctttggtgctgcacgcaacattgaaaacggcggatccttgaccatcatt
gcttctgcgctcgttgagaccgggtcgaagatggacgaagtcatcttcgaagagttcaag
ggaactggcaacatggagctgcgcctctcacgtgcacttgctgacaagcgcatcttccct
tcagttgatgtcaacgcatctggaacccgccgcgaagaaatgctcatgggtgctgacgaa
gtcaaggtcacctggaagcttcgccgcgcccttgctggtctggaccagcagcaggcgctt
gaaagcgtcgtgggcaagctcaaggaaactgcaaccaacgttgagttcttgatgctgatg
cagaagtccaacgcaggttctgcttccaaggaggactaa
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