Aurantimicrobium sp. MWH-Uga1: AURUGA1_01335
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Entry
AURUGA1_01335 CDS
T05539
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
auw
Aurantimicrobium sp. MWH-Uga1
Brite
KEGG Orthology (KO) [BR:
auw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
auw03032
]
AURUGA1_01335 (topA)
03400 DNA repair and recombination proteins [BR:
auw03400
]
AURUGA1_01335 (topA)
Enzymes [BR:
auw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AURUGA1_01335 (topA)
DNA replication proteins [BR:
auw03032
]
Prokaryotic type
DNA Topoisomerases
AURUGA1_01335 (topA)
DNA repair and recombination proteins [BR:
auw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AURUGA1_01335 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AXE55010
UniProt:
A0A344W473
LinkDB
All DBs
Position
complement(1335580..1338468)
Genome browser
AA seq
962 aa
AA seq
DB search
MIDEPDLPCILTFWNAIFSEECLSSTKKLVIVESPAKAKTIGKYLGDDYEVLASVGHIRD
LPKPSELPADMKKGPFGKFAVNVEDGFQPYYVVSENSKKTVAELKKALKSADELYLATDE
DREGEAISWHLLEVLKPKVPVHRMVFHEITKEAIQAAQENTRELDTALVDAQETRRILDR
LYGWEMSDVMRRRVGPGTSAGRVQTVALRLVVDRERERMAFTSANYWDLLATLGTTTEAS
TQFEAKLVRIGGNTIASGKDFNDNGELTTKASLLSEEAAVALAAALRESTTEITVAGLET
KPYTRRPSAPFTTSTLQQEASRKLKFSSKQTMSIAQGLYENGYITYMRTDSPSLSGQAIA
AARTQATTLYGADQVADAPRQYSGKSKNAQEAHEAIRPAGETFKTPAELENVLRGNEWKL
YDLIWKRTVASQMADAKGQTATVTVKATPASGESVEFTASGTVITFRGFLNAYEESTDEE
RNAQDAQAEAKLPVMTEGQKLILAEVEAKGHDTTPPPRYTEATLVKKLEELGIGRPSTYA
SILGLIVDRGYVTPKGSAFVPAWVAFSIVRLMQEHYTDLVDYAFTAEMEEDLDKIAGGEG
TGSQWLKKFYFGEPGHHGLREILDNIGDIDPRELNTFPVGDTGAAIRVGKYGPYIEVANP
DATEDEKPRIVNIPLDLAPDELTPEKVQELIDAPIVTDRVLGINPENGKTVVSKDGRFGP
YVTELEPEPEVALDEAEIDPATGEVVEVKKKKRVAKAEVVKPRTASLFKSMDPATVDLET
ALKLLNLPREVGVDPESGEVITSQNGRYGAYLKKGTDTRSLENEDQIFAIDLAGALELFA
QPKYGARKAASAIKEFDADPESGKPIKIKDGRFGPYVTDGTTNATIPRGEVPEEIDFDRA
VELLAIKRAKGPVVRKKAAAKKPAAKKKTTKKVGDTIVVKKAGAKKAATTLGKSGISSKA
SE
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atgattgacgaacccgatttgccgtgtatcttgaccttttggaacgccatattttcggag
gaatgtttgtctagcaccaaaaagctcgtcatcgtagagtcaccagcaaaagccaagacc
attggcaagtaccttggcgacgactacgaagtgctcgcatccgtcggccacatccgtgac
ctacccaagcccagcgagcttcctgcagacatgaaaaaaggacccttcggtaagtttgct
gtcaacgtggaagatggattccagccctactacgtcgtgagtgaaaacagtaagaagact
gttgctgagctcaagaaggcactcaagagcgctgatgagttatatctggcaaccgatgaa
gaccgtgagggtgaagccatctcgtggcaccttctcgaagttctcaagcctaaagttcct
gtgcaccggatggtgttccacgaaatcaccaaggaagccattcaggcggctcaagaaaac
actagagagctcgacacagcgctcgtagatgcccaagaaacacgtcgaatcctggaccgt
ctctacggctgggaaatgtccgatgtgatgcgccgccgagtagggcccggaacttcagct
ggtcgagtccaaacagttgcattgcgtctagttgttgaccgtgaacgtgaacgcatggcg
ttcacctcagccaattactgggaccttctggcaaccttgggaacaacaaccgaggcaagc
acgcaatttgaagccaaacttgtgcgcattggtggaaacacaattgcttcgggtaaggac
ttcaatgacaacggtgagctgaccaccaaggcttccctgttgagtgaagaagctgcagtt
gcactcgctgctgcattgcgagagtccaccacggaaatcacagtcgctggactggaaact
aagccgtacacgcgtcgcccttcagcgccgtttaccacgtcgacgctgcagcaggaagcc
tcgcgcaaactgaagttctcatcaaagcagacgatgagcattgctcaggggttgtatgag
aacgggtacatcacctacatgcgtaccgattctccttcactatctgggcaagctattgca
gctgctcgtacccaagccaccaccctctatggggctgatcaggtagcagatgctccccgc
cagtactcaggtaaaagcaagaacgctcaagaagcacacgaagcgattcgtcctgccggt
gaaaccttcaaaaccccggcagagcttgaaaacgttttgcgcggtaacgagtggaagctc
tacgacctgatttggaagcgtaccgtggcatctcaaatggcagatgctaaggggcagact
gcaactgtgaccgtgaaagcaacgcccgcctctggcgagagtgttgaattcaccgccagc
ggaaccgtcattaccttccgtggcttcctcaatgcgtatgaggaaagcactgacgaagaa
cgcaacgctcaagatgctcaagcagaagcaaagcttccggtgatgaccgaggggcaaaag
ctcatcctcgcggaggtcgaagccaaaggccacgacacaaccccgcctccccgctacacc
gaagcaaccttggtcaagaagctggaagagctgggtattggtcgaccttccacctatgca
tctatcttggggctgattgttgaccgtggttatgtcactccgaagggctccgcatttgtt
cctgcttgggttgccttctccatcgtgcgactgatgcaagagcactacacggatcttgtg
gactatgccttcacggcagaaatggaagaggacctcgacaagatcgccggcggcgaagga
accggatcacagtggttgaagaagttctactttggtgagcctggccaccacggtcttcga
gaaatcctcgacaacatcggcgatattgatcctcgcgagctcaacacgttccctgtgggg
gacactggtgcagcaatccgagtgggtaaatatggtccctacatcgaagtagccaacccg
gatgccaccgaggatgaaaagcctcgcatcgtgaacattccgctggatttggcacccgat
gagctcactcctgaaaaggtgcaagaactcattgatgctcccatcgttactgaccgagta
ctgggaatcaacccagaaaatgggaaaactgttgtttccaaggacggtcgcttcggcccc
tatgtcaccgagcttgaaccagagccagaggttgccctggatgaagcagaaattgatcct
gctaccggtgaggtcgttgaggtcaaaaagaaaaagcgagttgcaaaggccgaggtagtc
aagcctcgcacagcgtccctgttcaagagcatggaccctgcaacggttgatctcgagact
gcactgaagttgctcaaccttcctcgtgaggttggagttgaccctgaatccggtgaggtc
atcacctcccaaaatggtcgttacggcgcgtacctcaagaagggcaccgacacccgctct
cttgagaacgaagaccaaatctttgccatcgatttagctggagcactagaactgtttgcg
cagcccaagtacggtgcacgcaaggctgccagtgccattaaagaatttgatgcagaccca
gaaagtggcaaacccatcaaaatcaaggatggccgattcggcccctatgtcactgatgga
accaccaacgcaaccattcctcgtggtgaggttcccgaagaaattgacttcgaccgtgcg
gttgaacttctcgcaatcaagcgcgccaaaggacccgttgtacgcaagaaggctgctgca
aagaagcctgccgccaagaagaagaccacaaagaaggtcggcgataccatcgtggtgaag
aaagctggagcaaagaaggctgcgaccactttgggtaaatcaggaatttcctctaaggcc
agcgagtag
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