Aureimonas sp. SA4125: Sa4125_20090
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Entry
Sa4125_20090 CDS
T08429
Symbol
dnaE1
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
auz
Aureimonas sp. SA4125
Pathway
auz03030
DNA replication
auz03430
Mismatch repair
auz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
auz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Sa4125_20090 (dnaE1)
03430 Mismatch repair
Sa4125_20090 (dnaE1)
03440 Homologous recombination
Sa4125_20090 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
auz03032
]
Sa4125_20090 (dnaE1)
03400 DNA repair and recombination proteins [BR:
auz03400
]
Sa4125_20090 (dnaE1)
Enzymes [BR:
auz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Sa4125_20090 (dnaE1)
DNA replication proteins [BR:
auz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Sa4125_20090 (dnaE1)
DNA repair and recombination proteins [BR:
auz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Sa4125_20090 (dnaE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
T2SSK
HROB
Motif
Other DBs
NCBI-ProteinID:
BDA84467
LinkDB
All DBs
Position
2163856..2167344
Genome browser
AA seq
1162 aa
AA seq
DB search
MAGATKPDAAAPALKFVHLRCHSAFSLLEGALRIDQIVKHAKADGMPAIGIADTGNLFGA
LEFSEKAAKAGIQPITGCQLEVDFGDADPEAGVSQRERNAPEPHAPLVFIAATEAGYANL
VEIVSLAYLEHDGNVRPHVLLDWLRTRSEGIIALTGGPLGPIGAAIQAGRGGIARQRLET
LRAIFGDRLYVELQRHGQRGRRIESETIALAYDLELPLVATNEPFFHAPDDFDAHDALIA
VASNRLVSHEDRRRLTRDHYLKSQAEMAVLFADLPEALENTIEVAQRCSFRPRTRKPILP
RFAGADVDAAEAEVAEVLELRRQAEEGLEARLAAHGPCEGQTVEVYRARLAFELDVIERM
KFPGYFLIVADFIKWAKVQGIPVGPGRGSGAGSLVAYSLTITDLDPLRFSLLFERFLNPD
RVSMPDFDIDFCQDRRIEVIRYVQEKYGREQVGQIITFGTLQARACLRDVGRVLEMSYGH
VDKLCKMVPANPANPVTLAQALIEEPRLQEEREKEEIVDRLITIALKLEGLYRHASTHAA
GIVIGDRPLSQLVPMYRDPRSDMPVTQYNMKWVEQAGLVKFDFLGLKTLTTLKTAVDLIA
RRGIDIDLGSLPLDDKKTYDMLTRGETVGVFQVESIGMRKALIGMRPDRFEDIIALVALY
RPGPMENIPTYNARKHGEEKADYIHPMIEVVLKETQGVIIYQEQVMQIAQILSGYSLGEA
DLLRRAMGKKIRAEMDQQRVRFVEGAVKNDLTKPQANMIFDLLAKFADYGFNKSHAAAYA
LVAYQTAYLKANYPTEFLAASMTLDIGNTDKLNDFRLDATRLGIAVVPPSVQTSHRAFEV
EGDRIFYSLAAIKGVGEQAVEHIVEQRGTKGYATLEDFCARIDPKIVNKRTLENLVAAGA
FDCFGYDRAQLSANLEILSGYALRLHDARISGQNDMFGAASGEPERLRLNPAPGWTSTEK
LMREFQAIGFYLSAHPLDEYKDTLKRLRVQTHAEVVASVKRGASAGRLAGTVTSRQERKT
KSGGKLGIIALSDPSGQYEVVLFTEALTQFRELLEPGSSVILMVGAEERPEGISLRVQGV
QSLEDEAVRNQKALRVFMRDAGPLKVFRNQLRDPGDAEVSFVLIQSGGEREIEISLPGRY
RVSPQMASAIKAAPGVLEVELT
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgccaccaagccggacgcagcggcgccggcactgaagttcgtgcacctgcgc
tgccacagtgccttctcgctgctggaaggcgcgctgcgcatcgaccagatcgtcaagcac
gccaaggccgacggcatgccggcgatcggcatcgccgataccggcaatctgttcggcgcg
ctcgaattctcggaaaaggcggcgaaggccggcatccagccgatcaccggctgccagctg
gaagtcgatttcggcgacgccgatccggaggccggcgtgtcgcagcgcgagcgcaatgcg
ccggagccgcatgccccgctggtcttcatcgcggcgaccgaggcaggctatgccaatctc
gtcgagatcgtctcgctcgcctatctcgaacacgacggcaatgtccgtccccatgtcctc
ctcgactggctgcgcacgcggtctgaggggatcatcgccctgaccggtgggccgctgggg
ccgatcggcgcggcgatccaggccggacgcggtggcattgcccggcagcgcctggagacc
ctgcgcgcgatcttcggcgacaggctctatgtcgaactgcagcgccacggccagcgcggt
cgccggatcgagagcgagaccatcgcgctcgcctacgatctcgaactgccgctcgtggcc
accaacgaaccctttttccacgcgcccgacgatttcgacgcgcatgacgccctgatcgcg
gtcgcgagcaaccgcctcgtcagccacgaggaccgccgccgcctgacccgcgaccattat
ctcaagtcgcaagccgaaatggccgtcctcttcgccgacctgccggaggcgctggagaac
acgatcgaagtggcgcagcgctgctctttccggccgcggacccgcaagccgatcctgccg
cgctttgccggtgccgacgtcgatgcggccgaggccgaggtcgccgaagtgcttgagctt
cggcgccaggcggaggaggggctggaggcgcgccttgccgcccacggcccgtgcgaaggc
cagaccgtcgaggtctaccgggcgcgtctcgccttcgagctcgacgtcatcgagcggatg
aaatttcccggttacttcctgatcgtcgccgacttcatcaagtgggcgaaggttcagggc
attcccgtcggccccggccgcggctccggcgcgggctcgctcgtcgcctattccctgacg
atcaccgatctcgaccccttgcgattctcgctgctcttcgagcgttttctcaaccccgac
cgcgtgtcgatgcccgacttcgacatcgacttctgccaggaccggcgcatcgaggtcatc
cgctacgtccaggagaaatacggccgcgagcaggtcgggcagatcatcaccttcggcacg
ctgcaggcgcgcgcgtgcctgcgcgacgtcggacgcgtcctcgagatgtcctatggccat
gtcgacaagctctgcaagatggtgccagccaaccccgccaatccggtgacgctggcgcag
gcgctcatcgaggagccgcggctgcaggaggagcgcgagaaggaggagatcgtcgaccgg
ctgatcaccatcgcgctgaagctcgagggcctctaccgccacgcctcgacgcatgccgcc
ggcatcgtcatcggtgaccggccgctgtcgcagctggtgccgatgtaccgcgatccgcgc
tccgacatgccggtcacgcagtacaacatgaaatgggtcgagcaggcgggcctggtgaag
ttcgacttcctcggcctgaagacgctgacgacgttgaagacggcggtcgacctcatcgcc
cggcgcggcatcgacatcgacctcggcagcctgccgctcgacgacaagaagacctacgac
atgctgacgcgcggcgagaccgtcggcgtgttccaggtggaatcgatcggcatgcgcaag
gcgctgatcggcatgcggcccgaccgcttcgaggacatcatcgccctcgtcgcgctttac
cgtccgggcccgatggagaacatcccgacctacaacgcgcgcaagcacggcgaggaaaag
gccgactacatccacccaatgatcgaggtggtgctgaaggagacgcagggcgtcatcatc
taccaggaacaggtgatgcagatcgcccagatcctgtccggctattcgctcggcgaggcc
gatctcctgcgccgcgccatgggcaagaagatccgcgccgagatggaccagcagcgcgtg
cgcttcgtcgagggcgccgtcaagaacgacctgacgaagcctcaggcgaacatgatcttc
gaccttctggcgaagttcgccgactatggctttaacaagagccacgccgccgcctatgcg
ctcgtcgcctatcagacggcctatctcaaggcgaactacccgaccgaattcctggccgcg
tcgatgacgctcgatatcggcaataccgacaagctgaacgattttcgcctcgacgcgacg
cgccttggcatcgccgtcgttccgccctccgtccagacctcgcaccgtgccttcgaggtc
gagggcgaccggatcttctattcgctggcggcgatcaagggggtcggcgagcaggcggtc
gagcacatcgtcgagcagcgcgggacgaagggctatgccacgctggaggatttctgcgcc
cgcatcgatccgaagatcgtcaacaagcgcacgctcgaaaacctcgtcgccgccggcgct
ttcgactgcttcggctacgaccgggcacagctctcggccaatctcgagatcctgtcgggc
tatgccctgcgcctgcatgacgcgcgcatttccgggcagaacgacatgttcggcgccgcc
tccggcgagccggagcgcctgcgcctgaaccccgcgccgggctggacttcgaccgagaag
ctgatgcgcgagttccaggcgatcggcttctatctctccgcccatccgctcgacgagtac
aaggacacgctgaagcggcttcgggtgcagacccatgccgaggtcgtggcgagcgtcaag
cgcggggcgagcgccggcaggctcgccggcaccgtcacctcgcgccaggaacgcaagacc
aagagcggcggcaagctcggcatcatcgccctgtcggatcccagcggccagtacgaggtc
gtgctgttcaccgaggcgctgacgcagtttcgcgagctgctcgaaccgggatcgtcggtg
atccttatggtcggggccgaggaacggccggaaggcatctcgctgcgcgtccagggcgtc
cagtcgctggaggacgaggccgttcgcaatcagaaggcgctgcgggtcttcatgcgcgat
gcagggccgctgaaggtttttcgcaaccagctgcgcgatcccggcgacgccgaggtctcc
ttcgtgctgatccagtccggcggtgagcgcgagatcgagatctcgctgcccgggcgctat
cgcgtctcgccgcagatggccagtgcgatcaaggcggcgccgggcgtcctcgaggtggag
ttgacgtaa
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