Aureimonas sp. SA4125: Sa4125_20200
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Entry
Sa4125_20200 CDS
T08429
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
auz
Aureimonas sp. SA4125
Brite
KEGG Orthology (KO) [BR:
auz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
auz03032
]
Sa4125_20200 (topA)
03400 DNA repair and recombination proteins [BR:
auz03400
]
Sa4125_20200 (topA)
Enzymes [BR:
auz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Sa4125_20200 (topA)
DNA replication proteins [BR:
auz03032
]
Prokaryotic type
DNA Topoisomerases
Sa4125_20200 (topA)
DNA repair and recombination proteins [BR:
auz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Sa4125_20200 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
BDA84478
LinkDB
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Position
complement(2177219..2179996)
Genome browser
AA seq
925 aa
AA seq
DB search
MDLVIVESPAKAKTINKYLGSNFKVLASYGHVRDLPAKDGSVLPDDDFSMSWDVDKASQK
RLTEIAQAMKGADRLILATDPDREGEAISWHVLEVLRQKKVVGTKPVSRVVFNAITKKSV
LDAMANPRQIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGTRSAGRVQSVALRLVCDR
ESEIERFKPEEYWNIGARLATPRGDEFSARLSVFEGDKIQRLTVANGERAETIRAMLDGA
SFKVASVEAKPTKRNPGPPFTTSTLQQAASAKLGFSASRTMQVAQKLYEGMDIGGETVGL
ITYMRTDGVQIAPEAIDDARAAIGSTFGAKYVPDKPRIYTSKAKNAQEAHEAIRPTSFAR
LPKDVEQHLDRDQARLYDLIWKRTIASQMASADIERTTVDIAARNGDKTATLRATGSVVR
FDGFLGAYVDHRDDALPAADSDDDESARLPLIEVNETAEKRAIEASQHFTEPPPRYSESS
LIKKMEELGIGRPSTYAATLQTLQDREYIINENRRLIPDSKGRLVTAFLHNFFEKYVEYD
FTADLEQQLDRISAGELAWKDVLRDFWKDFSAQVDGTKELRVTDVLDALNIELAPLAFPP
KEDGTEPRACPRCAGGQLSLKLGKFGAFVGCSNYPECNFTRQLGSNMQAEGVGDAGLDEP
KVLGDDPDSGEPITLRSGRFGPYVQRGEGKEAKRSSLPKGWLPAELDFEKALQLIRLPRE
VGLHPESGKPILAGLGRYGPFLQHDGAYANLETIEDVFTVGLNRAVTVIAEKKDRFAARA
APAALATLGEHPDFGGQITVREGRFGPYVNVAKINATLPKGKDPASVTLEEAIILLNERA
EKSGKAPKKAPAKKAPAKKAADKKAADKVVKTPAKKAPAKKAVEGAAKTSARAKPAAPVA
AAPVKAQVVTTLIKAPKKVAKPAAE
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atggatctcgtcatcgtcgagtcgccggcaaaagcgaagacgatcaacaagtatctcggc
tcgaacttcaaggttcttgcctcttacggccatgtccgggatcttccggccaaggacggc
tccgtgctgcccgacgacgacttctcgatgagctgggacgttgacaaggcctcgcagaag
cggctgaccgagatcgcccaggcgatgaagggagccgaccggctgattctggctacggat
ccggatcgcgagggcgaggcgatatcctggcatgtgctggaggttctgcggcagaagaag
gtcgtcggcaccaagcccgtcagccgcgtcgtcttcaacgccatcaccaagaagtccgtg
ctcgacgcgatggccaatccgcgtcagatcgacgagccgctggtcgacgcctatctggcc
cgccgcgccctcgactatctcgtcgggttcaccctttcgccggttctctggcgcaagctg
cccggcacgcgttcggcgggccgtgtgcaatcggtggcgctgcgcctcgtctgcgaccgc
gagtcggagatcgagcggttcaagcccgaggaatactggaacatcggcgcgcgtctcgcg
accccgcgcggcgacgagttcagcgcgcgcctttccgtcttcgagggcgacaagatccag
cgactgacggttgcgaacggcgagcgtgccgagacgatccgcgccatgctggacggcgcg
agcttcaaggtcgcctcggtcgaggccaagcccaccaagcgcaatcccggcccgcctttc
accacctcgacactgcagcaggcagcgtcggccaagctcggcttctcggcttcgcgtacc
atgcaggtggcgcagaagctctacgagggcatggacatcggcggtgagacggtcggtctc
atcacctatatgcggacggacggcgtgcagatcgcgccggaagccatcgacgacgcgcgc
gccgccatcggctcgaccttcggtgccaaatacgtgccggacaagccgcgcatctacacg
agcaaggccaagaacgcccaggaggcccacgaggcgatccggccgacatccttcgcccgt
ctgccgaaggacgtcgagcagcatctggaccgcgaccaggcacgcctctacgacctgatc
tggaagcgcaccatcgccagccagatggcctcggccgacatcgagcgcaccaccgtcgac
atcgccgcgcgcaacggcgacaagacggcgaccctgcgcgccacgggatcggtcgtgcgc
ttcgacggctttctcggcgcctatgtcgatcaccgcgacgatgccctgcctgccgccgac
agtgacgacgacgagtcggcacgcctgccgctgatcgaggtgaacgagacggcggagaag
cgggcgatcgaggcgtcgcagcactttaccgagccgccgccgcgctattccgaatcctcg
ctgatcaagaagatggaagagctcggcatcggccgtccctccacctatgccgcgacgctg
cagacgctgcaggaccgcgaatacatcatcaacgagaaccgccggctgattcccgattcc
aagggccggctggtcacggccttcctgcacaacttcttcgagaaatacgtcgaatacgac
ttcaccgccgatctcgagcagcaactcgaccggatctcggcgggtgaactcgcctggaag
gacgtgctgcgcgatttctggaaggatttctccgcccaggtcgacggcaccaaggagctt
cgcgtcaccgacgttctcgacgcgctgaacatcgagctcgccccgctcgccttcccgccg
aaggaggacggcaccgagccgcgcgcctgcccgcgctgcgccggcggccagctcagcctg
aagctcggcaagttcggcgccttcgtcggctgctccaactatcccgaatgcaacttcacc
cgccagctcggcagcaacatgcaggccgaaggcgtcggcgatgccgggctcgacgagccg
aaagtgctgggcgacgatcccgacagcggcgagccgatcacgctgcgttcgggccgtttc
ggcccctatgtccagcggggcgagggcaaggaagccaaacgctcgtccctgcccaagggc
tggctgccggcggagctcgatttcgagaaggcgctgcagctgatccggctgccacgcgag
gtggggctccatcccgaaagcggcaagccgattctcgccgggctcggccgttacgggccg
ttcctgcagcatgacggcgcctatgccaatctcgagacgatcgaggacgtcttcaccgtc
ggcctcaaccgggccgtcaccgtgatcgccgagaagaaggatcgctttgccgcgcgcgcc
gctccggcggcgctggcgacgctaggcgagcatcccgatttcggtggtcagatcacggtg
cgggagggcaggttcggcccctatgtgaacgtcgcgaagatcaacgccaccctgccaaag
ggcaaggacccggccagcgtgacgctggaagaggcgatcattcttctcaacgaacgcgcg
gaaaaatccgggaaggcgccgaaaaaggcaccggcgaagaaggctccggccaagaaggcg
gcggataagaaggcggcggacaaggtcgtcaagactccggccaagaaggcgcccgcgaag
aaggctgtcgagggcgcggccaagacaagcgcccgggcgaagcctgcggcgcctgtcgct
gccgcgccggtcaaggcgcaggtcgtgacgaccctcatcaaggccccgaagaaagtcgcc
aagccggcggccgagtag
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