Aureimonas sp. SA4125: Sa4125_20470
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Entry
Sa4125_20470 CDS
T08429
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
auz
Aureimonas sp. SA4125
Pathway
auz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
auz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sa4125_20470 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
auz03019
]
Sa4125_20470 (rne)
03009 Ribosome biogenesis [BR:
auz03009
]
Sa4125_20470 (rne)
Enzymes [BR:
auz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Sa4125_20470 (rne)
Messenger RNA biogenesis [BR:
auz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Sa4125_20470 (rne)
Ribosome biogenesis [BR:
auz03009
]
Prokaryotic type
rRNA processing factors
Sa4125_20470 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-C2HC
Motif
Other DBs
NCBI-ProteinID:
BDA84505
LinkDB
All DBs
Position
complement(2200391..2203318)
Genome browser
AA seq
975 aa
AA seq
DB search
MPNKMLIDASHPEETRVVVVRGNRIEEFDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALVEDEMARVREEEEDEERKITAQRRNPRRPGG
GKSIRAAESSGDDSIFEPIAAEGGEPGDEETDGAPSLSENEHEAPELMGDDAGGDELLGD
ESEDETSGEEADAEGRPARSASGRGRRSRSRRGHGAEDAPGGDDEEEVVDEMGAEDAMEE
VPVRVPRAPRKQYKIQEVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTAR
GGGISRKITNIADRKRLKEVARELEVPKGMGIILRTAGAMRTKAEVKRDYEYLMRLWETV
RSLTLASAAPTLVYEEGSLIKRSIRDLYNKDIDQICVSGEEGYREAKDFMRMLMPSQSKV
VQAYRDPVPIFARGGIEAQLDRMLQPHVTLKSGGYIIINQTEALVAIDVNSGRSTREHSI
EDTAYQTNLEAAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKMKDCLKDDRARIQ
IGHISHFGLMEMSRQRIRASVLESTTRVCPTCDGVGHIRSNSSLALHVVRAIEEHVQKHS
THDVIVKVPTATALYVLNEKRQTIEDLERANGLRITIEADDSHGHQHVAIEQGPEAVRRE
YLPAVAPVVYEDEPEDLDLVEDVEETEETGSATAVVDAPAGDADTEEKTDDQPRRKRRRR
RRRGGSDASDDGQDAGDAGEDDGGDDASGDDTVATDDEGDAEETAATQVTSDDESSEEER
ARKRRRRGRRGGRKNRDGETEGVSAGADDRTEGENGEAVTSGEDGPLEAGALPLPETAEE
VGAAEVAELPFEASPEPVRNPWDSAPATEAEHEQPTAEPTAVAEVAPVSDEPAGAEVAPV
AAVLEPVTEAPALLEAETAAGETRVTDEAAAPVEEAAAPAEPAVRSEPAVTSSRGSEQAE
PGAKRTGWWARRSFF
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgccaaacaagatgctgatcgatgcgtcgcatcccgaggaaacccgggtcgtcgtcgtc
cggggtaaccggatcgaggaattcgacttcgaatccgagcataagaagcagatcaagggc
aatatctacctcgccaaggtgacgcgcgtcgaaccgtcgcttcaggccgccttcgtcgaa
tacggcggcaatcgccacggtttcctggccttcagcgagatccatcccgactactaccag
atcccggtcgcggaccgtcaggcgctcgtcgaggacgagatggcccgcgtccgcgaggaa
gaagaagacgaagagcgcaagatcaccgcgcagcgtcgcaatccccgtcggccgggcggc
ggcaagtcgatccgcgctgccgaatcgtcgggcgacgacagcattttcgagccgatcgcg
gccgagggcggcgagccgggcgacgaagagacggacggcgcgccatccctttccgagaat
gagcacgaagcgcccgagctgatgggcgacgacgccggcggcgacgaactcctcggcgac
gagtccgaagacgagacgtccggtgaggaagccgacgccgaggggcgcccggcacgcagt
gccagcggtcgtgggcgccggtcgcgctcccgccgtggtcacggcgccgaggatgcgccg
ggcggcgacgatgaagaggaagtcgtcgacgagatgggcgccgaggacgcgatggaggaa
gtccccgtccgcgttccgcgcgccccgcgcaagcagtacaagatccaggaagtcatcaag
cgccggcagatcctgctggtccaggtcgtgaaggaagagcgcggcaacaagggcgcggct
ctcaccacctatctctcgctcgccggccgctattccgtgctgatgccgaacaccgcgcgc
ggcggcggcatatcgcgcaagatcaccaacatcgccgaccgcaagcgtttgaaggaagtg
gcgcgcgagctcgaagtgccgaagggcatgggcatcatcctgcggaccgcgggcgcgatg
cgcaccaaggccgaggtgaagcgcgactacgaatatctgatgcgcctgtgggagaccgtc
cgcagcctgacgctcgcctcggcggcgccgaccctcgtctacgaggagggcagcctgatc
aagcgctcgattcgcgatctctacaacaaggacatcgaccagatctgcgtctccggcgag
gagggctaccgcgaggccaaggacttcatgcggatgctgatgccgagccagtcgaaggtc
gtccaggcctatcgcgaccccgtgccgatctttgcgcgcggcggcatcgaggcgcagctc
gaccgcatgctgcagccgcatgtgacgctgaagtcgggcggctacatcatcatcaaccag
accgaggcgctcgtcgccatcgacgtcaattcgggccggtcgacgcgcgagcactcgatc
gaggacaccgcctaccagaccaatctcgaggcggccgaggaagtggcgcggcagctgcgc
ctgcgcgatctcgcgggcctcatcgtcatcgacttcatcgacatggaagagaagcgcaac
aaccgcgccgtcgagaagaagatgaaggactgcctgaaggacgatcgcgcccgcatccag
atcggccatatctcgcatttcggcctgatggagatgagccgccagcgcatccgcgccagc
gttctggaatccaccacccgcgtctgcccgacctgcgacggcgtcggccacatccggtcc
aactcctcgctggcgctgcacgtcgtgcgcgccatcgaggagcatgtgcagaagcattcg
acgcacgacgtcatcgtcaaggtgccgacggcgaccgcgctttacgtcctcaacgaaaag
cgccagacgatcgaggatctggagcgggccaacggtctcaggatcacgatcgaagccgac
gattcgcatggccaccagcatgtcgccatcgagcagggtcccgaggctgtccgccgcgag
tacctgccggcggtcgcccctgtcgtctacgaggacgagccggaggatctcgacttggtc
gaggacgtcgaggagaccgaagagaccggttcggcgaccgcggtggtcgacgcacccgcc
ggcgatgccgacaccgaggagaagaccgacgaccagccgcgccgcaagcgccggcgtcgg
cgccggcggggcggcagcgacgcctcggatgacggccaggatgccggcgatgctggcgag
gacgatggcggcgacgacgcgtcgggcgacgacacggtcgctaccgacgacgagggcgac
gccgaagagacagcagcgactcaggtgacgtccgacgacgagagctccgaagaggagcgc
gcccgcaaacgccgccgtcgcggtcgccgtggcgggcgcaagaatcgcgacggggaaacc
gagggcgtgtcggccggtgccgatgaccggaccgagggcgagaacggcgaagccgtgacc
tccggcgaggacggtccgcttgaagcaggcgccctgcccttgcctgagacggcggaagag
gtcggtgcggccgaggtagccgagctgccgttcgaggcttcccctgagcccgtccgcaac
ccctgggacagcgctccggcgaccgaggctgagcacgaacagccgactgccgagcccacc
gccgtggccgaggtcgcacctgtttcggacgagccggctggggctgaggtggctccggtt
gcggcggtcttggaacccgtgaccgaggctccggcgctgctggaggcggaaactgcagcg
ggcgagacccgcgtgaccgacgaggctgccgcgcccgtcgaggaggctgccgcgcccgcc
gagccggcggttcgctcggagccggccgtcacctccagccgcggcagcgaacaggccgag
cctggagccaagcgcaccggctggtgggcgcgccgcagcttcttctag
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