KEGG   Aureimonas sp. SA4125: Sa4125_43910
Entry
Sa4125_43910      CDS       T08429                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
auz  Aureimonas sp. SA4125
Pathway
auz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:auz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Sa4125_43910 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:auz03021]
    Sa4125_43910 (rho)
   03019 Messenger RNA biogenesis [BR:auz03019]
    Sa4125_43910 (rho)
Transcription machinery [BR:auz03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Sa4125_43910 (rho)
Messenger RNA biogenesis [BR:auz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Sa4125_43910 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_25 AAA_22 S1CSD-TOTE-2 NACHT AAA Spore_III_AA
Other DBs
NCBI-ProteinID: BDA86849
LinkDB
Position
complement(4643317..4644582)
AA seq 421 aa
MSEMKLQDLKNKKAPELIAFAEENGVENAPVLRKQELQFAILKNLAAQGVEIIGEGVVEV
LQDGFGFLRSPDANYLPGPDDIYISPSQLRRFSLKTGDTVEGPIRSPKDGERYFALLKVN
TINFDDPERIKHKSHFDNLTPLYPNERFNMELENPTSKDLSARVIDLVAPLGKGQRALIV
APPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPAV
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIYPA
MDILKSGTRKEELLVPKADLQKIFVLRRILAPMGTTDAVEFLNDKLKQTKMNADFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgtccgaaatgaagcttcaggatctgaagaacaagaaggcccccgagctcatcgccttt
gccgaggagaacggggtcgagaacgcgccggtcctgcgcaagcaggaactgcagttcgcg
atcctgaagaacctcgcggcccagggtgtcgagatcatcggcgagggtgtcgtcgaagtg
ctgcaggacggtttcggcttcctgcgctcccccgatgcgaactacctgccgggccccgac
gacatctacatctcgccctcgcaactccgccgcttctcgctgaagaccggcgacaccgtc
gaaggcccgatccgcagcccgaaggacggcgaacgctatttcgcgctcctcaaggtgaac
acgatcaacttcgatgatcccgagcggatcaagcacaagagccatttcgacaatctgacg
ccgctctatccgaacgagcgcttcaacatggaactggagaatccgacctcgaaggatctc
tcggcccgcgtcatcgatctcgtcgcaccgctcggcaagggtcagcgcgcgctgatcgtc
gcaccgccgcggacgggcaagacggtgctcttgcagaacatcgcccattcgatcaccgcc
aaccatccggaatgctacctgatcgtcctcctgatcgacgagcggccggaggaagtcacc
gacatgcagcgttcggtccgcggcgaggtggtctcctcgaccttcgacgaaccggcggtg
cgccacgtccaggtcgccgaaatggtcatcgaaaaggccaagcgcctcgtcgagcatggc
cgcgacgtcgtcattctcctcgattccattacccgcctcggccgcgcctacaacaccgtc
gtgccgtcctccggcaaggtactgacgggcggcgtcgacgcgaacgccctgcagcggccg
aagcgcttcttcggcgccgcgcgcaacatcgaggaaggcggctcgctgaccatcatcgcg
accgccctgatcgacaccggcagccgcatggacgaagtcatcttcgaagagttcaagggc
accggcaattcggaaatcgttcttgaccgcaaggtcgcggacaagcgcatctaccccgcc
atggacatcctcaagtccggaacgcgcaaggaagagctgctcgttccgaaggccgacctt
cagaagatcttcgttctgcgccgcatcctcgcgcccatgggcacgaccgatgcggtcgaa
ttcctgaacgacaagctgaagcagacgaagatgaacgcggacttcttcgactccatgaat
acctga

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