Trichormus variabilis: Ava_0238
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Entry
Ava_0238 CDS
T00277
Name
(GenBank) multi-component transcriptional regulator, winged helix family
Organism
ava
Trichormus variabilis
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Response_reg
PAS_9
HATPase_c
PAS_3
GAF_2
PAS
PAS_4
Trans_reg_C
HisKA
GAF
Hpt
Diguanyl_cycl_sensor
PAS_8
PDE8A_N
GlnR_1st
cREC_REC
T4BSS_DotH_IcmK
HATPase_c_3
VpsR
Spectrin
HATPase_c_5
GAF_3
EAD9
Motif
Other DBs
NCBI-ProteinID:
ABA19864
UniProt:
Q3MGM2
LinkDB
All DBs
Position
300431..305320
Genome browser
AA seq
1629 aa
AA seq
DB search
MKILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQTYDYDLILLDVILPRLDGI
SLCRQIRSSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLRRGG
TTAQPILEWGNLQLDPSSCEVRYNQNLLSLTPKEYALLELFLRHSRRVFSCSMILEHIWS
YEDTPGEEAVRTHIKGLRMKLRNAGAPGDLVETVYGIGYRLKAQEEEQGSKDEVKHSQST
SKGKSQQQTLTAIAGIWQKFYGRVDEQVKVLEQAAMTSDRPEIVTLTQETLNPELRSQAI
REAHTLAGSLGTFGLPEGSKLARKIEQLLKSGKKLTPTEIQSLQNWVKLLRQEVAAHEPQ
AASPETTSAAILQLQPPQAEAKVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETL
RDVNPDLLILDVEMPYTNGIELCQVVRNDPQWSELPILFLTVHKDGEIVNQVFSVGADDF
VSKPIVGPELVTRIINRLERVKLLHKVSESRGIGEKNSPPSPSFTDWRTIFNAEPECVTI
VATDGTLLDINPAGVAAIEADSAGAVIGKRVYSLVVPEYQQVFRQLNESVCQGEQGTLEF
EIITCRGNRRWMATHAVPVRNETDGNLVQLSITRDVTQYKQAELEIKRINRTLQTLSDCN
QLVIRTQDEGELLQKVCQILVDVGNYRLAWVAFAENDAEKSIHPVAQAGYEQGYLQSLNL
TWADTIRGQGPTGTAIRTGKTAIIQNILTDPRFEIWRCQASNRGYASSISLPLMNNGQAF
GALNIYAAEANAFDSDEVKLLEELTADVAYGIVALRNRRDRQIAEAALRESQERLALTLE
AVNLGIWDWNITTNQIIWSEGHARLFGIESEKFDGTYEAFQACIYPEDRGGLAEVINSAR
QQKTDYSHEFRIISPDGNIHWIEGTGKLYYNEMGEAVRMLGIVRDITSRKQIEATLQKVN
NELELRVAERTAELVNVNRQLQSELDERQRVEEALRISQVRLARILDIADDAIISINGNQ
QITLFNQGAEKIFGYSAEAIIGQRLDTLIPQRFTQAHRQHVADFGQAPNLARRMGERREI
FGRRQDGTEFPAEASISKFQLDKEVFYTVILRDITERKQIERMKDEFVSVVSHELRTPLT
SIHGSLGMLASGLLPADSEQGRRLLEIATDSTERLVRLINDILDIERIESGRVKMERESC
NLTDLIESAVSIMRPLANKAGVKLSVSHPSIQLWVDPDRIVQTLTNLLSNAIKFSTAEKT
VWLVAQQYGDELLVTVKDNGRGIPADKLDSIFERFQQVDSSDSRNHDGTGLGLAICQSIV
QQHGGRIWAESVLSEGSNFYFTLPILPISPNSELPDSLTHYPLSPEGDLPSPIPSTHSPL
VLVCDDDPLIRTELQSLLEQGGYRVVTVATGKEAIASASTQHPDVIVLDLLMPGMNGWET
MAMLKESTETKHIPIVICSVYKPTTNNQPSSDFVDWISKPVQESYLLHSLRQAIAKSSRR
VRILIVEDDADLAELFVTLFERHDIETFSAKTGREAIHLSQEVNPDLLILDLILPETDGF
AVVDWLQKHQRLCNIPVVVYSAKDLDESERKRLKLGHTEFLTKGRVTTKEFEQRVIELLQ
RITPTNVRD
NT seq
4890 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattttaattgtcgaggatgacgagttaaatgcttatgcgctgacagccgttctc
acgaatcagaactatgcagttgaagtaggatctgatggtattactgcttgggaattaatc
caaacttacgattatgatttgattcttttggatgtgatactacccagattggatgggatt
agtctttgtcggcaaatacggtcaagtggtcggcagatgccaattttattattaaccggt
tgtgatagtagccacgaaaaggcgattgggttagatgcaggtgcagatgattatgtagtt
aaaccgtttgatgaagaagaattagtggcgcgtgtacgggctttgttacgtcggggaggc
acaacagcccagccgattctagaatggggtaatttgcagcttgaccccagtagttgtgaa
gtcagatacaatcaaaatttactatcattaactcccaaggaatatgcacttttggagtta
tttctgcgtcacagccgccgagtgttcagctgtagcatgattttagaacacatatggtct
tatgaagacactccaggagaagaagcggtacgcacccatataaagggcttgcggatgaag
ttgcgtaacgcgggagcgcctggtgatttagtagaaacagtctatggaattggttatcgc
ctcaaagcacaggaagaggaacaaggaagtaaggacgaggtaaaacattctcagtctact
tcaaaaggcaaatctcagcagcaaacactgactgcaatagctggtatttggcaaaagttt
tatgggcgggtagatgagcaagtcaaggtattggaacaagcggcgatgacctctgaccga
ccggaaatcgtcacccttactcaagagactttaaacccagaattacgctcacaagcaata
cgagaagcccacacactagccggttcactggggacttttggtttacctgaagggtcgaag
ttagccaggaaaattgagcaactattgaaatctggtaagaaattaacgccgactgagatt
caaagtttgcaaaattgggtcaagttattaaggcaagaggttgcagcacatgaaccgcaa
gcagcatcacccgaaacaacttcagcagctatcctccagctacaacctcctcaagcagaa
gcaaaagtcttagcagtagacgacgacccgcaaattctcgccatattgcaaacattactt
catccttggggattacaagtaattaccttagatgatccgcgtcaattttgggaaacgtta
agagatgtgaatccagacctgttaattctagatgtggagatgccttataccaatggtata
gaactatgccaggtggtgagaaatgatccccaatggagtgaattgcccatactcttcctg
acggttcacaaagatggggaaattgtcaatcaggtatttagtgttggtgctgacgacttt
gttagtaaacccatcgtcgggccagagctagtaacgcgaattatcaatcggttagaacgg
gtgaaattgctacataaagtaagtgagagtaggggtataggggaaaaaaattctccccca
tcccctagcttcacagattggcgcactattttcaacgctgaaccagaatgcgtcaccata
gtggctactgatggtactttattggatattaatccagccggtgtggcagctatagaagca
gatagtgctggtgcagtgattggtaagcgggtgtattcgttggtagttcctgaatatcaa
caggtgtttcgccaactcaatgaaagcgtttgtcaaggagaacaaggaacactagaattt
gaaattatcacttgtcgtggtaaccgtcgttggatggcgactcacgctgtacctgtgcga
aatgaaacagatggtaatttggtgcagttgtcaattacacgggatgtcacccaatacaaa
caagcagaactggaaattaaacgcattaatcgcaccttgcaaactttaagtgactgcaat
caattagtaatacgtactcaagatgaaggtgagttattgcagaaagtttgccaaatttta
gtggatgttggtaactatcgattagcttgggtggcttttgcagaaaatgatgctgaaaaa
agtattcatccagtggctcaagctggttatgaacaaggatatctgcaatctctcaatctt
acttgggcagatacaatccggggtcaagggccgacaggaacggcaattcgcaccggaaaa
acagccattattcaaaatattttgactgatcctagatttgaaatttggcgctgtcaagct
agtaatcggggttacgcatcgtccatttctttacccttaatgaataatggtcaagctttt
ggtgccttgaacatctacgctgcggaagcgaatgcttttgatagtgatgaggtgaaactt
ttagaggaactgacagcagatgtggcttatggcatagtagcattacgcaatcggcgcgat
cgccaaattgccgaagcagcactacgcgaaagtcaagaacgtctggctttgaccctagaa
gcagtcaacttaggcatttgggactggaacatcacgactaaccaaattatctggtctgaa
ggtcacgcccgattatttggcatagaatcagagaaatttgacgggacttatgaagccttt
caagcttgtatctatccggaagacaggggaggcttggcagaggtaatcaattcggctcgc
cagcaaaaaactgactacagtcatgaatttcgcatcatttcgccagatggtaatattcac
tggattgaaggaacaggcaaactctactacaacgaaatgggtgaagcagtgcggatgttg
ggtatagtcagagatattacttcccgcaagcaaatagaagcaactctgcaaaaagtcaat
aacgaactggagttgagagtagcagaacgaactgctgagttagtcaacgtcaatcgacaa
ttgcaatcagaactcgacgaacgccagcgcgtagaggaagcactacgcatatcgcaagtg
cggctggcacgcattttagacattgctgatgatgccattatttctattaacggtaaccaa
caaatcactttatttaatcaaggtgcagagaaaatttttggctactctgccgaggcaatt
atcggacaacgcctagatacacttataccccagcgtttcacccaggcacatcgtcagcac
gtagctgattttggacaggctcccaacttggcacggcgtatgggagagcggcgagagata
tttggtcgtcgtcaagatggaacagaattcccggctgaggcttctatctccaaatttcaa
ctagataaagaggtattttatactgtaattttacgtgatattacagaaagaaaacaaatt
gaacggatgaaagatgagtttgtttctgttgtcagtcatgaactccgcacccccttaact
tctattcatggttccttaggaatgctagctagtggtttattaccagccgactcagaacag
gggagacgtttgttggaaattgccactgatagtacagaacgcctagtacggttgattaac
gacatattagatatagaacgtatcgaatctggtagggtgaaaatggagcgagaaagttgc
aaccttaccgacttgattgagtccgcagttagtattatgcggcctttagctaataaagct
ggagtgaaattatcagtttcccatccatcaattcaattatgggttgatccagaccggatt
gtgcagacattaactaatctgttgagtaatgcgattaaattttcgacggcggagaaaaca
gtatggttagtagcacaacaatatggcgatgaactattggtgacggtgaaagataacgga
cgcggtattcccgccgacaaacttgatagtatttttgagcggtttcaacaggtagattct
tccgattcacgcaaccatgacggtactggtttgggcttagctatttgccaaagtattgta
cagcagcatggcggacgcatctgggcagaaagtgtcttgagcgaaggtagtaatttttac
tttactttaccaattttaccaatatccccaaattcagaacttcccgactctctcacccat
taccccttatccccagagggggacttaccttccccaattcccagtacccactccccccta
gttttagtttgtgacgatgatccacttatccgcacagaactacagtcactcttagaacaa
ggaggatatcgagtagtcacggtggctactggaaaagaagcgattgcctcagcgtcaact
caacatccagatgtgattgtactagatttactcatgccagggatgaatggttgggaaaca
atggctatgttgaaggaaagtacagaaaccaaacatatcccaattgtgatttgcagtgtc
tacaaaccgactacaaataaccaacccagtagtgattttgttgattggataagtaaacca
gtccaagaaagctatctgttacattctctcagacaagcaatagccaaatcttcccgccga
gtccgcattcttattgttgaagatgatgcagatttagctgagttgtttgttaccttgttt
gaaagacatgatattgaaaccttctcagccaaaaccggacgggaagccatccacctcagc
caagaagtaaatcctgatttactcattcttgatttaattttgccagaaactgacggattt
gctgttgtagattggctacagaagcaccagcgcctatgtaatatccctgtagtggtttac
tctgctaaagacttggatgaatcagaacgtaaacgcctcaagctaggacatacagaattt
ttaaccaaaggccgtgtcacaaccaaagagtttgaacaacgagtaattgaactacttcag
cgaattacgccgactaatgttagggattag
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integrated database retrieval system
