Trichormus variabilis: Ava_0374
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Entry
Ava_0374 CDS
T00277
Name
(GenBank) type II secretion system protein
KO
K02653
type IV pilus assembly protein PilC
Organism
ava
Trichormus variabilis
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
ava02044
]
Ava_0374
02035 Bacterial motility proteins [BR:
ava02035
]
Ava_0374
Secretion system [BR:
ava02044
]
Type II secretion system
Pilin secretion/fimbrial assembly protein
Ava_0374
Bacterial motility proteins [BR:
ava02035
]
Pilus system
Pilus assembly proteins
Ava_0374
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
T2SSF
DUF6507
EhaL
Motif
Other DBs
NCBI-ProteinID:
ABA20000
UniProt:
Q3MG86
LinkDB
All DBs
Position
complement(485684..486907)
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AA seq
407 aa
AA seq
DB search
MPTFIAQVRDTQGKTRKEKVVAESLAQARTNLRDQGLVVQELKQSQNFAANFDLQKFQNS
FVKVTVKEKAVFSRQLATLVNAGVAIVRGLGVLGDQCTNAKLKQALNDISNDVQSGVNLS
DAMRKHPDCFDGLYVSMIQAGEVGGVLDEVLNRLAKLLEDMARLQNQLKSALAYPVVVGI
LATAIFVGMTVFLIPIFAKIFVELGTELPALTQFLMNCSEILRSWRAGLIVAVIVGTKFS
YTQYYKTRVGKETIDRLALKMPLFGDLIQKSSVARFSRTFGSLTRSGVPILTSLEIVRDT
SGNQVVANAIDAARAEIQQGGMISIALQKEQVFPPMAIQMISIGEETGELDGMLMKIADF
YEDEVEQAVKALTSVLEPIMILVLGGMVGTILLSMYLPLFKVFEKLG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgccaacatttattgcccaagttcgagacacgcaaggaaaaactagaaaagagaaagtt
gttgctgaatctttagcacaagctcggactaatctgagagatcagggattagtcgttcaa
gaacttaagcagtcgcaaaactttgctgccaattttgatttgcaaaagtttcagaattcc
ttcgtcaaggtaacagtgaaggaaaaggccgtgttttctcgacaacttgccacattggta
aatgctggtgtagcaattgtccgaggactaggagtattaggtgatcagtgtaccaatgct
aaacttaagcaagccctcaatgatattagcaatgacgttcaaagtggggtcaatctttcg
gatgctatgcgtaagcatcctgactgttttgatggtttgtatgtgagcatgattcaagct
ggggaagtcggtggtgttctagatgaagttttgaatcgtttagccaaattgttagaggat
atggctcgattacaaaaccaacttaaatcagccctagcttatcccgttgttgtgggtatt
ttagcaaccgccattttcgtggggatgactgtttttcttatccccatttttgctaagatt
ttcgtggaattaggtacagaattaccagcccttacccaattcttaatgaattgcagcgag
attttgagaagttggcgagcaggactgattgttgctgtgattgtaggcacaaaatttagt
tatacacagtactataaaacccgtgttggtaaagaaacaattgaccgtcttgctttaaaa
atgcccttatttggtgacttaattcaaaagtcttcagttgctcgtttcagccgtactttt
ggttctctaactcgttctggtgtaccgattctcacctctttggaaattgtgcgcgatacc
tctggaaatcaggtagttgctaatgctattgatgcggcaagagccgaaattcaacaaggt
ggtatgattagtattgctttacaaaaagagcaagtttttccaccaatggcaattcaaatg
attagcatcggtgaagaaaccggggaattagatggaatgctgatgaaaattgccgatttc
tatgaagatgaagtcgagcaagcagtcaaagcattaaccagcgttttagaaccaattatg
attttggttctagggggtatggtggggacaatcttgttatcaatgtatctgcctctgttc
aaagtatttgaaaaattgggataa
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