Trichormus variabilis: Ava_0376
Help
Entry
Ava_0376 CDS
T00277
Name
(GenBank) type II secretion system protein E
KO
K02652
type IV pilus assembly protein PilB
Organism
ava
Trichormus variabilis
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
ava02044
]
Ava_0376
02035 Bacterial motility proteins [BR:
ava02035
]
Ava_0376
Secretion system [BR:
ava02044
]
Type II secretion system
Pilin secretion/fimbrial assembly protein
Ava_0376
Bacterial motility proteins [BR:
ava02035
]
Pilus system
Pilus assembly proteins
Ava_0376
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
T2SSE
MshEN
AAA_16
AAA_22
AAA_18
AAA_30
AAA_23
Acb2_Tad1_hairpin
AAA_29
Kinesin
cobW
DUF7109
AAA_28
KxDL
Motif
Other DBs
NCBI-ProteinID:
ABA20002
UniProt:
Q3MG84
LinkDB
All DBs
Position
complement(488175..490187)
Genome browser
AA seq
670 aa
AA seq
DB search
MTYSSPQRRSTALTTRTEFSPFGNKLVQSGYINTEQMRQALIESRKSGRPLTEVLESITG
RQLSPEYLRQYKKQQLFELKILYGVEYLDPEVNDIGSTMVGNLIETLIPVDICRRHRLVP
LSKNDEHTPPYVLVAMVAPDNLEASDDLNRILRPQGLTLQRMVITQEDYQRLINQYLDEL
AVRQKHLEQEKFTDINQDLENLGNLDLEDAPEEMEADLGSAMKGAEDAPVINLVNRILAK
ALHDKVSDIHIEPQEENLRIRFRKDGVLREAFDPLPKKIIPAVTARFKIISNLDIAERRL
PQDGRIRRMFEGRKVDFRVNTLPSRYGEKVVLRILDNSSTQLGLNKLITDPETLQIVQDM
VSKPFGLILVTGPTGSGKTTSLYSALAEKNSPGINISTVEDPIEYSLPGITQVQVIREKG
LDFATALRAFLRQDPDVLLVGETRDKETAKTAIEAALTGHLVLTTLHTNDAPGAIARLGE
MGIEPFMVSSSLIGVLAQRLVRRVCGECRIAYTPTTEELARYGMTASQEVSVTFYKANTI
PAEAIAEAKAKNQLCPACNGVGYKGRCGVYEVMRVTENLQTLINEEAPTERIKEVAVEEG
MKTLLAYSLDLVRQGATTLEEVERVTFTDTGLEAELKAKRKTGLTCRTCSAILQPEWLDC
PYCLTARFED
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgacttactcgtcaccacaacggcgcagtaccgctcttactacaagaacagagttttca
cctttcggtaataagctagtgcagtctggctacattaacaccgaacagatgagacaggcg
ctgattgaaagtcgcaagtctggtagacccttaacagaagttttggagtcaattactggg
cgacaattatcacctgagtacctcaggcagtacaagaaacaacaattatttgaactgaaa
atactatacggtgttgaatacctcgatccggaggtcaacgatatcggtagcacgatggtg
ggtaatttaattgaaaccctcatcccagttgatatctgccgtcgtcatcgtttagtacca
ctatctaaaaatgatgaacacaccccgccttatgttttagtggcgatggttgctccggat
aacttggaagcgtcggacgacctaaaccgcatcttgcgcccccaaggtttaacattacag
cgtatggtaattacccaggaggattaccaacggctaattaaccaatatttggatgaattg
gctgtgcggcaaaagcacctggaacaagaaaaatttacagatattaatcaggatttagaa
aatcttggcaatctcgacctagaagatgctcctgaagagatggaggctgatttaggttca
gcgatgaagggtgcagaagatgcacctgtcatcaacctcgttaacagaattttagcgaag
gcgttgcatgacaaggtttctgatatccacattgaaccccaagaagaaaatctgcggatt
cgcttccgcaaggatggggtactgcgggaggcttttgaccccttaccgaaaaaaattatt
ccggctgtaacagccagatttaaaattatctccaatttggatattgccgagcgacgttta
ccgcaagatggacgcatccgccggatgtttgagggacgtaaagtagacttccgcgtgaat
accttacccagtcgctatggggaaaaggtagtactgcggattttggacaactcttctacg
caactgggactgaataagttaattactgacccagaaacattgcagattgtccaagatatg
gtgagtaagcctttcggtttaattttggtaactgggccaactggttcaggtaagacaact
tccttatattcagcactggcggagaagaactcaccaggtattaatatcagtacggtagaa
gacccaattgagtacagtttgccagggattacccaggtacaggtaattagagaaaaaggg
ctagattttgcgacggcattacgggcttttttgcgacaagaccccgatgtgttgctggtg
ggtgaaacaagagacaaagaaacagcgaaaacagcgattgaagcggctttaacaggtcac
ttggtattaactacattacacaccaacgatgcccctggtgcgatcgctcgtttgggtgaa
atgggtattgaaccattcatggtttccagttctctgattggggtattggcacaacgttta
gtgcgccgtgtttgtggtgagtgccgtattgcttacactcccaccactgaggagttagct
cgttatggcatgacggcttctcaagaagtgtctgtcaccttctataaagctaacaccatc
cccgcagaagcgatcgccgaggccaaagcgaaaaaccagctttgtccagcttgtaacggt
gttggctacaaaggacgctgtggtgtttatgaagtgatgcgggttacagagaacctacaa
actttaatcaacgaagaagcaccaacagaacgcatcaaagaagtagctgtagaagaaggg
atgaaaaccttattagcttatagcttagacctcgttcgccaaggtgctaccaccctagaa
gaagtggaacgggtgacatttacagacacaggtttagaagctgaattaaaagctaaacgc
aagactggtcttacctgccggacttgcagcgccatattacaaccagaatggctagattgt
ccctactgtctaacagcccgttttgaagattag
DBGET
integrated database retrieval system
