Trichormus variabilis: Ava_0641
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Entry
Ava_0641 CDS
T00277
Name
(GenBank) SSU ribosomal protein S12P methylthiotransferase
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
ava
Trichormus variabilis
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ava03009
]
Ava_0641
Enzymes [BR:
ava01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
Ava_0641
Ribosome biogenesis [BR:
ava03009
]
Prokaryotic type
ribosomal protein modification factors
Ava_0641
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM_2
TRAM
Mur_ligase_C
Thioredoxin_6
DUF5005
KH_KhpA-B
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
ABA20265
UniProt:
Q3MFH1
LinkDB
All DBs
Position
808329..809651
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AA seq
440 aa
AA seq
DB search
MGEKPTIAISHLGCEKNRIDTEHMLGLLVKAGYGVDTNEELADYVIVNTCSFIESAREES
VKTLVELAEANKKIVITGCMAQHFQTQLLEELPEAVAVVGTGDYHKIVNVIERAEQGERV
TLVSAKPTYIADETTPRYRTTTEGVAYLRVAEGCDYRCAFCIIPHLRGNQRSRTIESIVA
EAEQLVAQGVQEIILISQITTNYGLDIYGKPKLAELLRALGKINVPWIRMHYAYPTGLTP
DVIAAIQETPNVLPYLDLPLQHSHSEVLRSMNRPWQGRVNDEIIERLKIAIPGAVLRTTF
IVGFPGETEAQFEHLLQFVQRHEFDHVGVFTFSAEEGTPAYKLSNQLPQEVMDERRDRLM
ALQQPISWRKNQQEVGKTVEVLIEQENPESGKLIGRSGRFSPEVDGQVYVDGEAKLGTII
PVKIHSADEYDLFGQVVSHN
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaaaagccgacaatagcaatttctcacttgggctgtgagaaaaatcgaattgat
acagaacatatgttaggcctgctggtaaaagcaggttatggtgtagatacaaatgaagaa
ttagccgactacgtaatagtcaacacttgtagttttatagaatcagctagggaagaatct
gttaaaaccttagtagaactcgcagaagccaacaaaaaaattgtcattacgggctgtatg
gcgcagcacttccaaacacaattattggaagagttacccgaagcagtggccgtagttggt
acaggagactaccataaaatagttaacgtcattgagcgagcagagcaaggcgaacgggtt
acactagttagcgccaagccaacctatatcgccgatgaaacgaccccacgctatcgaact
actaccgaaggtgtagcctacctgcgagtagccgaagggtgtgattaccgttgtgcattt
tgcataattccccacttacgcgggaaccagcgatcgcgtactatagaatctatagttgct
gaagccgagcaactagtagcccaaggggtgcaagagatcattcttatttcccaaatcact
accaactatgggttggatatttatggtaagcccaaattagccgaactattgcgtgcttta
gggaaaattaatgtaccgtggattaggatgcactacgcctatcccactggattaaccccg
gatgtgatagcggcaattcaagaaacaccaaacgtcttaccatatctagatttgcctcta
caacactctcatagtgaagttcttcgtagcatgaaccgtccctggcaagggcgagtcaac
gatgaaatcatcgagcgcctcaagatagccattccaggtgctgtgttacggacaacattt
atagtgggcttccctggagaaacagaagcacagtttgagcatttactacagttcgtccaa
cggcatgagtttgatcatgtaggtgttttcaccttttccgcagaggagggaacccccgct
tacaagttatcaaatcaactgccccaagaggtgatggatgaacgccgcgatcgcctcatg
gcactccagcaacccatttcttggcgaaaaaatcagcaggaagtcggcaaaacagttgaa
gtcctgattgagcaagaaaatcctgaaagtgggaaattaattggtcgttctggcagattt
tctccagaagttgatggtcaggtctacgttgatggcgaggcgaagctaggaaccattatc
cctgtgaaaattcacagcgctgatgagtatgacctgtttggtcaagttgtcagtcataac
tga
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