Trichormus variabilis: Ava_0642
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Entry
Ava_0642 CDS
T00277
Name
(GenBank) DEAD/DEAH box helicase-like protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ava
Trichormus variabilis
Pathway
ava03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ava_0642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ava03019
]
Ava_0642
03009 Ribosome biogenesis [BR:
ava03009
]
Ava_0642
Enzymes [BR:
ava01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Ava_0642
Messenger RNA biogenesis [BR:
ava03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ava_0642
Ribosome biogenesis [BR:
ava03009
]
Prokaryotic type
rRNA helicases
Ava_0642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
HEM4
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ABA20266
UniProt:
Q3MFH0
LinkDB
All DBs
Position
809721..811262
Genome browser
AA seq
513 aa
AA seq
DB search
MNLSFPELGISQERVEHLEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLP
ILERLDPQQKAVQAIVLTPTRELAIQVHDAMAQFIGNSGLRTLAIYGGQSIDRQMLQLKR
GVHIVVGTPGRVIDLLERGNLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQERQTA
LFSATMPPSIRMLVNKFLRSPVTVTVEQPKATPNKINQVAYLIPRHWTKARALQPILEME
DPETALIFVRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLTRFRSRQVRWVVATD
IAARGLDVDQLSHVINYDLPDSVETYVHRIGRTGRAGKEGTAITLVQPFERRKQQIFERH
VRQNWQLLSIPTRAQIEARHILKLQEQVREALAGERLASFLPIVSELIEKYDAQAIAAAA
LQIAYDQTRPAWLSTDAEIPEEVASTPKPKLGGKRREFSGDRGRSNWNKSDNNNSDDERR
GTPKPKLRTSRRETSATPSNPKLGSPAARESAS
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgaacttatcgtttcccgaactaggcatttcccaagaacgcgtagaacacttagaaaaa
cttggttttacagcaccaacaaacattcaagcccaagccatcccccaactgttgtcagga
cgtgatgtagttggtcaatcacaaacaggtacaggtaaaacagcagcattttcactgcca
attttagagcggttagatcctcaacaaaaagcagtacaagccatagttttaaccccaacc
cgcgaattagcaattcaagtccacgatgcaatggctcaattcattggtaacagtggatta
cggactttagcaatttacggtggtcaatcaattgaccgtcaaatgctgcaactcaaacgc
ggcgtgcatatcgttgtcggtacaccagggcgggtaattgacttgctagaacggggtaac
ctgaagctagatcaagtcaagtggtttgtcttagatgaagccgatgaaatgttgagcatg
ggctttattgacgatgtagagaaaattctttctcaagcaccccaagagcgtcagacagct
ttattctcagctaccatgccaccatcaattcggatgttggtcaacaagtttttgcgatcg
cccgtcacagtcaccgtcgagcagccaaaagccacccccaataaaatcaatcaggtagct
tatctcatcccccgtcactggacaaaagccagagccttacagccaattctggaaatggaa
gacccagaaacagctttaatctttgtccgcaccagacgtacagccgccgaactcaccagc
caactgcaagcagccggtcacagtgtagatgaatatcatggtgacttgtctcaacaagca
cgggaacggttattaactcggttccgtagtcgtcaagtgcgctgggtagtagcaaccgac
attgctgcacgcggtttagatgtcgatcaactatctcacgtaatcaactacgacctaccc
gatagcgtcgaaacctacgtccaccggatcggtcgtactggtcgtgctggtaaagaaggt
acagcaattaccttagtgcaaccatttgagcgtcgcaaacagcaaatttttgaacgccat
gtccgccaaaattggcaattgctttccattcccacacgggcgcaaatcgaagcacgccac
atcctgaaattgcaagagcaagtcagagaagccttagctggtgagcgtttagcttccttc
ttgcccattgtcagcgaattgatcgaaaaatatgatgctcaagcgatcgccgcagccgca
ctacaaatcgcttacgatcaaactcgtcccgcttggttaagcacggatgccgaaatccct
gaagaagtcgcatccactcccaaacctaaactaggcggcaaacgtcgtgagttttccggt
gacagaggtcgttccaactggaacaaatcagacaataacaacagcgacgacgaaagacgc
ggtactcccaaaccaaaattacggactagccgtcgtgaaacttccgctacacctagcaat
cctaagttgggttcacctgctgcgagagaatcagcttcttag
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