Trichormus variabilis: Ava_1029
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Entry
Ava_1029 CDS
T00277
Name
(GenBank) multi-sensor hybrid histidine kinase
Organism
ava
Trichormus variabilis
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAS_9
PAS_3
Response_reg
PAS
PAS_4
HATPase_c
PAS_8
HisKA
GAF
Hpt
PAS_11
PDE8A_N
GAF_3
GAF_2
PAS_7
Motif
Other DBs
NCBI-ProteinID:
ABA20653
UniProt:
Q3MED3
LinkDB
All DBs
Position
1247780..1253242
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AA seq
1820 aa
AA seq
DB search
MNRQHKHHRCNPVNFLSKQNLLPFLLGIVILLVVVMLWLRLQAEEEIKIQQLIKQQAIAT
QTELVTQLKTRILALKRIGKHWEMHGSIPQAQWELEARAYLEDYGGYQAIKLVDPSWQVL
RSVSVAKNKAAENLEIMPKFPQCKGATAQPSHETTLTHTVNLNQGDRVFFACVPLWMGDK
FGGAVLGIFQVKQFFESVLHIAPGYKIRVFDGQELIYGQDRQSSTLPSWQQSVNINFDGM
TWQLQIYPTPELLKDLYSPLPTVVLVAGIFNAGAVTLLIYFAQATKLSNHQIGRINQELA
DRIEKQTQVEIALRASENRLRELLETVRVIPWEVDLKTQHFTYVGPQAETLLAYPIAQWY
EENFWDNHLHPHDRDWAVRFCQEAANKGQNHELEYRMLAADGRVVWLRDVVNVVEVDGTP
VMLRGFMFDITDLKRVEETLRLRERALAASSNGIVISDAKLPNYPVIYVNSAFEQITGYK
ATEIVGRNCRFLQGNDTTQPAIEELRSALKAGKNCKVILRNYRKDGSLFWNQLSVSPIYN
DNGQLSHFIGIQTDISDRQQAEASLRRQALTFENIYDGVIITNLQGQILDWNPAAERMFG
YSKDHICGQSISILHKVEEDAALNSAIIAEITKQGRWSGEINFVRQDGSQGICETTIVAL
QDDQGQTVATISVNRDITERKHAELLLRRSEERFQAFMNHSPTPAWITDIDGTIVYLSET
YRRTFQLPTQELIGTNIFDIYPPELIQTFRETIQIVARTHQVMETVESVPCSDGTVRDFL
VYKFPISSKPDECLIGGIAIDITERKQAEAALRKSEERWQLVIEGNQDAIWDWNIITNET
FRSARWAELIKEQNYQPIADHADCISRIHPDDYERVMAVRQDCLSRKIPNYVVEYRLRCN
DDSYKWVLVHATGQWDERGNPVRMVGSIKDITERIEAQEALQRQLHRTLLLEKITQKIRQ
SLDSKEIFETAATQIGQALAVDRCLIHSYISHHDPHIPLVAEYNNVLDYCSMQKWEFTTT
GNRHILQMMSQDKAIASANVYTDPLLQTAVPSCCEIGVKSMLAVRTSYQGEPNGAICLHQ
CKYFRQWTPEEIELLEAVAAQLGIALAQAQLLEQETRQREELTIKNFALEQAKRAAEAAN
RAKSEFLAMMSHEIRTPMNAVIGMTGLLLDTELTSQQRDFVETVLTSGDALLSIINDILD
FSKIESGKLELEEQPFEVRTCVEQVIDLLAAKAAQKDIELAYLIHPQVPMQIAGDLTRLR
QILTNLLNNAIKFTPEGEVVVSVRSQPSPNQKTKNCCEIIFTIKDTGIGIAPETMDLLFQ
PFVQADASMTRKYGGTGLGLVISKRLGEMMGGYLWVESRGCVGGNPPPGWQRKNSISSAS
VATGSTFYFSMTVPVVAHADLETSITSPVQLSGKRLLIVDDNPTNRQILRLQAEPWQMET
YTAPSGAEALALIDQGMAFDIAILDVQMPEMDGLTLARQIRQRPSYQHLPLVILTSWGQP
DTDLSDIEFAACLNKPIKQSQLFDVLAASLGNQPIRASVVPDRSAQVNSCLAQQIPLRIL
LAEDIVVNQKVALLILKKLGYRADVVANGLEVLEALQRQSYDVVLMDVNMPEMDGLKASQ
IICQTWSPRSRPYIIAMTANAMRGDREACLAAGMDHYISKPLQLEELAKALGKCHPSTSS
TEKALEKTSSQNQTFTDISDLKFATIDTKILQALRDMLGGDKVAFAELINCYLTESPKLI
ENLNVAINTEDTQGIWKTAHKFKSSSGSVGAVFLAQLCKLLEAKGRNNNLEGCIELGSQL
CQEYELVKTALYREVNKETP
NT seq
5463 nt
NT seq
+upstream
nt +downstream
nt
gtgaataggcagcacaaacatcaccgatgtaatccagtaaactttttaagcaaacaaaat
ttgctgccgtttttgcttggtattgtgattttattggttgtggtgatgctgtggctaaga
ctacaagccgaagaagaaatcaaaattcaacagttgatcaaacagcaagcgatcgccacc
caaactgaattagtaacacaactgaagactcgcattctggcattaaaacgtataggtaaa
cactgggaaatgcacggcagcattccccaggcacaatgggaactagaagcaagagcatat
cttgaagattacggaggttatcaagccatcaagctggttgacccatcatggcaagtactg
cggtctgtttctgtagcaaaaaacaaagcagccgagaatttagagataatgccaaaattc
ccacaatgtaagggagcaacagcacagccaagccatgaaactacgctaactcatacagtt
aatctcaaccaaggcgatcgggtatttttcgcttgtgtacctttatggatgggagataag
tttggtggtgcggtcttaggaatttttcaggttaaacagttctttgagtcagttttacac
atagcaccaggttacaagattagagtatttgatggtcaagagttgatctatggccaagat
agacagtcctcaaccctaccatcttggcaacagtcagtaaacatcaactttgatgggatg
acttggcaattgcagatttacccaaccccagaactattaaaagatttatattcacctcta
ccaacagttgtattagtagccggaattttcaacgctggggcagtcaccctactaatttat
tttgctcaagccaccaaacttagtaaccatcagattggcagaatcaaccaagaactagct
gacagaattgaaaaacaaacacaggtagaaattgccttgcgtgccagtgaaaaccgtttg
cgagagttattagaaacagtcagagttataccttgggaagttgacttaaaaactcagcat
ttcacctatgttgggccgcaagcagaaactttactggcataccctattgctcaatggtac
gaggaaaatttctgggacaatcatctacatccccatgaccgagattgggctgtgagattt
tgccaggaagcggccaacaaagggcaaaaccacgagttggaataccgaatgctagctgct
gacggcagagttgtctggttacgagacgttgtgaatgtagtggaagttgatggaactccc
gtaatgctgcgggggttcatgtttgatattaccgacctcaagcgagtggaagaaactttg
agattacgggagagagcattagccgccagcagtaatggcattgttattagcgatgctaaa
cttcccaattatccagtaatatatgtgaactctgcctttgagcagatcacaggttacaaa
gctacagaaatcgtcggacgcaactgtcgttttttgcaaggtaacgacacgacacaacca
gcaatcgaagagttgaggtcagcactcaaagcaggcaaaaattgtaaggtgattctgcgt
aactatcgcaaagatggcagtttgttttggaatcagttgagcgtctcgcccatttataac
gataatggccagttaagtcactttattgggattcaaactgatattagcgatcgccaacaa
gcagaagcttctttacgacggcaagccctcacctttgaaaatatttacgatggtgtgatt
atcaccaacttacaagggcaaattctggactggaatcctgccgcagaaaggatgtttggt
tatagcaaagaccatatttgtggacaaagtattagtattctgcacaaggtagaagaagat
gcagccttaaacagcgccattattgcagaaatcaccaagcaggggcgctggtcaggagaa
attaactttgtgcgtcaggatggtagtcaaggaatttgtgaaacaaccatcgttgcccta
caagatgaccagggacaaactgtcgccacaattagcgtcaatcgtgacattactgaacgc
aagcacgctgaattattgctcaggcgtagcgaagaacgttttcaagctttcatgaatcat
agccccacacctgcttggattacggatatagatggcacaattgtttatctaagcgaaact
tatcggcggacttttcaattaccaacacaagaactcattggtacaaatatttttgatatt
tatccacccgaattgattcaaactttccgagaaactatccaaatagttgcgcgtacccat
caagttatggaaactgtagagtctgtaccttgtagtgatggcacagtgcgagattttttg
gtttataaatttcccatatctagtaaacctgatgagtgtttaattggcggtattgctatt
gatattactgaacgcaaacaagccgaagcagctctgagaaaaagtgaagaacgttggcaa
ttagtcattgaaggtaatcaagacgctatttgggattggaatattatcaccaatgaaacg
tttcgttctgcgcggtgggcagaactcatcaaagaacaaaactatcaacccatagctgat
catgcagattgcattagccgcattcatcctgatgattatgagcgggtgatggcagttaga
caagattgtcttagtcggaaaattcctaattatgtggtggagtatcgtttgcgttgcaac
gatgacagctataagtgggtattagttcatgcaactggtcaatgggatgagcggggtaat
ccggtgcggatggttggttctatcaaagacattactgaacgcatagaagcgcaagaagcc
ttacaaagacaattacacagaaccctattactagaaaaaattacccaaaaaattcgccaa
agtctcgatagtaaagaaatttttgaaacagctgccacccaaattggccaagctttagca
gtcgatcgctgcctgatacattcttacattagtcatcatgacccacatattcccttagtc
gctgaatataacaacgttctcgattactgctcaatgcagaaatgggaatttactaccact
gggaatcgtcacattttacaaatgatgtcccaggataaggcgatcgcctctgccaatgtc
tacaccgatcctttactacaaacagcagtacctagctgctgtgaaattggggtcaagtcc
atgctagctgtccgcacttcctatcaaggggagcctaacggagctatttgtttacatcag
tgtaagtattttcgccagtggactcctgaagaaattgaattactagaagcagtggctgct
caattgggcatagcgttagctcaagctcagttattagagcaggaaacccgccaacgggaa
gaactcactatcaaaaattttgccttagaacaagcaaaaagggcagcagaagccgctaat
cgggcaaaaagcgaatttttggctatgatgagccacgaaatccgcactcctatgaatgct
gtgatcggcatgacaggattactcttagatacggaattaacttcccaacaacgcgacttt
gtggagacagttctcacaagtggcgatgctttgttgagtattattaatgacattctggat
ttctccaaaattgaatctggtaagttagaactggaagaacaaccttttgaggtgaggact
tgtgtagaacaagtcatcgacctcttagccgctaaagctgcccaaaaagatattgaactc
gcttacctgattcatccccaggtacccatgcaaatcgctggagatttaactcgcctgcgg
cagattttgacgaatctcctcaataatgcgatcaaatttaccccagaaggagaagttgta
gtctctgtgcgtagccagccatcacccaaccaaaaaaccaagaactgctgcgaaattatc
tttaccatcaaagatacaggtattggtattgccccggaaacaatggatttgttatttcaa
ccatttgtccaggctgatgcctcgatgacaagaaaatatgggggtacaggactaggactc
gttatcagcaaaagattgggtgaaatgatgggcggctatctttgggtagaaagtcggggg
tgcgttggtggaaaccctccccctggatggcaacgtaaaaactcaatctcatctgcttct
gtggctacaggttccaccttttatttttctatgactgtgcctgtggtggctcatgcagat
ttagagacttccatcacttccccagttcaactgagcggtaaacggttattaattgtcgat
gataatccaacaaatcgccagattttgagattacaagccgaaccttggcagatggaaact
tacacagccccatctggtgctgaagctttagcgctgatagaccagggaatggcctttgat
attgccattttggatgtgcagatgccggaaatggacggtctgacactggcaaggcaaatt
cgtcagcgtcccagttatcaacacttacccttggtgattttaacttcttggggtcaacca
gatactgacttgagtgatatcgaatttgcagcctgtctaaataaaccaattaaacaatct
caactttttgatgtcttagctgcaagtttgggcaatcaacctatccgtgctagtgttgtt
cctgatcgttccgctcaagtcaattcatgtctggcacagcagatacctctacgcattttg
cttgcagaagatatagtggtgaatcagaaagtggctctgctgatcctgaaaaaattgggt
tatcgggcagatgtagtggctaatggactagaagtgctggaagctttacaacgtcagtcc
tatgatgtagtgctgatggatgtgaatatgccagaaatggacgggttgaaagccagccaa
atcatttgtcaaacttggagtcctcgttctcgtccatatattatcgctatgaccgctaat
gctatgcggggcgatcgcgaagcttgcttggcggcgggaatggatcactacattagtaag
cctttacaacttgaggagttagccaaggcactgggcaaatgtcacccctcaactagttct
acagagaaagcactggagaaaaccagtagccaaaatcagacttttacagatattagtgat
ttaaaatttgccacaatagatacaaagattttacaagcattacgggatatgttaggagga
gataaagtagcatttgccgaattaatcaactgttaccttactgaatcccctaaattgatt
gaaaatttaaatgtagctattaatacggaagatacccaaggaatatggaagacagcgcac
aaatttaaatccagtagtggctcagttggggcggtttttctagcacaactttgtaaattg
ctagaagctaagggtcgcaataacaatctagagggttgtatagaacttggctcacagtta
tgtcaagagtatgaactagtcaaaacggctttgtacagagaagtgaacaaggagacacca
tga
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