Trichormus variabilis: Ava_1097
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Entry
Ava_1097 CDS
T00277
Name
(GenBank) bacteriocin-processing peptidase, Cysteine peptidase, MEROPS family C39
KO
K11004
ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
Organism
ava
Trichormus variabilis
Pathway
ava02010
ABC transporters
ava03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
Ava_1097
03070 Bacterial secretion system
Ava_1097
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ava02000
]
Ava_1097
02044 Secretion system [BR:
ava02044
]
Ava_1097
Transporters [BR:
ava02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB-BAC subgroup
Ava_1097
Secretion system [BR:
ava02044
]
Type I secretion system
alpha-Hemolysin/cyclolysin transporter
Ava_1097
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C39
ABC_tran
ABC_membrane
SMC_N
RsgA_GTPase
cNMP_binding
AAA_22
Peptidase_C39_2
DUF87
AAA_29
TAF1_subA
Peptidase_C70
nSTAND3
Guanylate_cyc_2
MMR_HSR1
AAA_23
AAA_18
Motif
Other DBs
NCBI-ProteinID:
ABA20721
UniProt:
Q3ME65
LinkDB
All DBs
Position
1335528..1338656
Genome browser
AA seq
1042 aa
AA seq
DB search
MNPSSSLRVQGGLQKDPSDQLSPTPEVAILNLLRLVAGDTSLVSELSQNWVVREFQLGDE
LANYVVDAATTDSSNVIYLVCQGRVRLLGFNQTLGREVSTQLVSAEQTFGADHFFCQQTL
PYRAIAASDGFVLSTTIAELKPWLQAIPQLKNYLQRLTSERQTLIFFKIYTKLHSLKSKK
LQELLPYLIAKHIPNGTTLSEATPPEKGRFWLGSGQVQSISIASFLPVVGDSWGYPESTL
PDGTAQTDLLVYQLSVENWDLARAIAPDYFTESYQPIEPPVEVVNVIPTDSKPQIALPKL
QNLRSPTAPATSDIEDIDFPQGVKQHKSRSSYSYPFIQQQSSSDCGAACLAMISQYWGKR
LSLYSLRNLAQVDRTGASLEGLTVAAQTLGYDVLAVRGSLQKLEWHYNPWVAHWQGNHYV
VVWQIKGDRILISDPAVGRKWLSRPQFETSWTGYALLLDPTERFQALKSEKFSLGRYGQT
LWNYRTVLRQIILASLLVQVFGLATPLFTQVILDQVMPIKNLPNLHIFAFSFLCLGIWRT
VLTTQHQHLLDYFANRIDLNLIGNFINYTLQLPLQFFASRQVDDIISRVQENRKIQLFIS
RRAIAAAVDMLMVVTYLGLMTYYSWQLTLLVLSWIIPVVILTVVASPYLKQASREISQES
ARQHSSMVEMMTGVATVKTATAERPLQKYWEERFLKMLKARLRGQKLAHRLQVTRTLINH
VGSTLVLWFGATLVMGGKMSLGQFVAFNMLTGNVTHPVLSLVGLWDEFQEILISVERLND
VYAAVPEASSQTTLLVMPPIRGEVRFENVSFRYNSFQERNALQNISFGVKPQQTIGIIGQ
SGSGKSTLANLLAGLYRPDTGRILIDGHDMAGVSPQSWRTQVGLVAQDSFLFSGTILENI
TLHDQELSLIQAIAAAKLSGAHDFIQALPLGYDTPVGERGFMLSGGQRQKIAIARALVRN
PKILILDEATSGLDAESERRFQQNLTQISQERTTFIVSHRLSTVRYADHIFVIDQGMVIE
HGTHQELMAIAGLYHHLAQLQL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgaatccctcttcgtcgttaagagttcagggagggctgcaaaaagatcccagtgatcag
ctatctcccactccagaagtggctatcctcaatcttttgaggttagttgcaggggatacg
agtctagtttcagagttgagccaaaactgggtagttcgtgagtttcaactaggtgatgaa
ctggcaaattatgttgtagatgcagcaactacagatagtagtaatgttatttacttagtt
tgtcaaggcagagttcgtttattagggtttaatcaaactctggggcgagaagtttccact
caattggtgtcggctgaacaaacttttggggcagatcatttcttttgtcagcaaacatta
ccatatcgagcgatcgccgctagtgatggctttgttctttctacgacaattgctgaatta
aaaccttggttacaggctatcccccaactcaaaaattacttgcagcgcttaaccagtgaa
cgccaaacactgatattttttaaaatttatactaaattacattctctcaagagtaaaaaa
ctccaagaattactaccttatttaatcgctaaacacatcccgaacggcacaaccttatca
gaagcaactccaccggaaaaaggacgtttttggctagggagtggtcaagtacaatcaata
tcaatagcaagttttttgccagtggtgggggatagttggggatatcccgaatccacctta
ccagatggaacagcgcagacagatttgctagtttaccaactgtctgtggaaaattgggat
ttggcaagagcgatcgctcccgattactttactgaaagctatcaaccaatagaaccacct
gtagaggtggttaatgttatcccgactgatagtaaaccacaaatagctttacccaagttg
cagaatttacgatcgcctacagcgccagccacatccgacatcgaagatatcgactttccc
caaggagtcaaacaacacaaatcacggtcgtcctactcctacccatttattcaacaacaa
agttcatcagactgtggtgcagcttgtttggcgatgattagccaatattggggtaagcgc
ttaagtctgtatagtttgaggaatttagcccaggtagaccgtactggcgcatctcttgaa
ggtttgacagtagcagcccaaaccttgggttatgatgtgctagcagtgcggggaagcttg
cagaaattagagtggcactataacccttgggttgcccactggcaaggaaatcactatgta
gtagtgtggcagattaaaggcgatcgcatcctgatttctgacccggctgtaggtaggaaa
tggctgtcacgtccgcaatttgaaacgagttggacaggctacgccctattattagacccc
acagaacgttttcaagccctcaaaagtgaaaaattttctcttggtcgctatgggcaaaca
ttgtggaattatcggacagtacttaggcaaataattctggcctccttattggtacaagtt
tttggattggcaactcccctgtttactcaggtgattctcgaccaagtcatgcctatcaaa
aacttgccgaatttgcatatatttgcgttcagctttttatgtttgggtatctggcggact
gtgttaacgacacaacaccaacacttactagattattttgctaaccgcatagatttaaac
ttgattggcaactttattaactatacgttgcagttacccttacaatttttcgcctcccgc
caggtagacgacattattagccgcgttcaagaaaaccggaaaattcaactgtttattagc
cgtagggcaattgcggcggcggtagatatgttgatggtggtgacttatctggggttgatg
acctattacagttggcaactcactcttttagttttgagttggatcatccccgtagtgatt
ttaactgtagttgccagcccctatctcaagcaagcatcaagagaaatttctcaggaatcc
gccagacaacactcctcaatggtagagatgatgactggggtagcgacagtcaaaacagcc
accgccgaacgtcctttgcagaagtattgggaagaacggtttttaaaaatgttaaaggcg
cggttgcggggacaaaagttagcccatcgtttacaagtgacgcggacgttaattaatcac
gttggtagcaccctggttttatggtttggggctactttggtgatgggtgggaaaatgtcc
ttgggacagtttgtggctttcaatatgctgactggaaatgtgactcatccagttttgtca
ttagttgggttatgggatgagtttcaagaaatcttgatttccgtggaacgactcaatgat
gtttatgcggctgtcccagaagccagttctcaaacaactttacttgtgatgccgccaatt
cggggcgaagtacgatttgagaatgtatcgtttcgttataactcgtttcaagaacgcaac
gccttacaaaatatctcttttggagtcaaaccccaacaaactatcggtattattggccaa
agtggttcgggtaaaagtactttagccaatttattagcgggtttatatcgccctgataca
ggcagaattttgattgatggacatgatatggctggggtgtcgccccaatcctggcggact
caggtggggttagtagcacaagacagttttctcttttcgggaacgattttagaaaacatt
actttgcacgatcaagaactgagtttaatccaagcgatcgccgccgccaagttatccggc
gcacacgattttatccaagccttacctctgggttacgataccccagtgggagaacgaggt
ttcatgctttctgggggacaaaggcaaaaaattgcgatcgcccgtgctttggtgagaaat
cccaaaattttgattttagatgaagccactagcggtttagatgcagaatcagaacgccgc
tttcaacagaatttaacccagattagtcaagaacgcactacttttatagtttctcaccgt
ctttccactgtgcgctatgctgaccatatttttgtcatagaccaaggaatggtgattgaa
catggcactcatcaagaactaatggcgatcgctggtctttatcaccacttagctcaactg
caactatag
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integrated database retrieval system
