Trichormus variabilis: Ava_1118
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Entry
Ava_1118 CDS
T00277
Name
(GenBank) ABC transporter, transmembrane region
KO
K11085
ATP-binding cassette, subfamily B, bacterial MsbA [EC:
7.5.2.6
]
Organism
ava
Trichormus variabilis
Pathway
ava02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
Ava_1118
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ava02000
]
Ava_1118
Enzymes [BR:
ava01000
]
7. Translocases
7.5 Catalysing the translocation of carbohydrates and their derivatives
7.5.2 Linked to the hydrolysis of a nucleoside triphosphate
7.5.2.6 ABC-type lipid A-core oligosaccharide transporter
Ava_1118
Transporters [BR:
ava02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB-BAC subgroup
Ava_1118
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC_membrane
SMC_N
ABC_ATPase
AAA_29
AAA_22
AAA_25
RsgA_GTPase
DUF3584
AAA_16
AAA_21
CspB_prodomain
ATP-synt_ab
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
ABA20742
UniProt:
Q3ME44
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All DBs
Position
1364894..1366714
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AA seq
606 aa
AA seq
DB search
MPKSPHKLFKANSFWKENHLILREIKHFRKIAILAVIFSFLAASFEGVSIGFLLSFLQKL
TTPNEPIQTGISWIDMILAANAWPIPPIYRISLLILLSTWMRATFNYFGGVYTESAQLNL
ADRLHKQIFEQLQALRLSYFAQTRSGELINTITTEIERIKQGFSGLAFVLTRIMTVCVYF
VVMFSISWQLSIISVLIFLLLAVGLSTLNKRVRETSFGISHANAQFTATAVEFINGIRTI
QAFGTQEFERQRFYKASTNQLNAAIKVVLAWTLVKPIAEGIATTVLISLIVISFTTFTLP
VASLLTFFFVLVRVIPNIQDINGTVAFLSTLQGSSENIKNILQTNNKPYLKDGKLHFQGL
KRSIDLVSVDFGYTADNLVLNNITLTIERGKTTALVGASGAGKTTLADLIPRFYDPTEGQ
ILVDGLDVQYFEINSLRRKMAVVSQDTFIFNTSIRDNIAYGTSGASEAEIREAARLANAL
QFIEEMPEGFDTKLGDRGVRLSGGQRQRIAIARALLRDPEILILDEATSALDSVSERLIQ
ESIEKLSVGRTVIAIAHRLSTIAKADKVVVMEQGRIVEQGNYQELLEQRGKLWKYHQMQH
ESGHSQ
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaatcaccacataaattatttaaagctaatagcttctggaaagagaaccattta
atattgcgagaaatcaaacattttcgcaaaatagctattttagccgtaatattttcattt
ttagctgccagttttgaaggtgttagtattggttttctactgtcatttttacaaaaattg
actactcctaatgagccaattcaaacaggaattagctggattgacatgattttggctgct
aacgcttggccgattccccctatatataggatatctctactaattttgttgagtacctgg
atgcgtgctaccttcaattattttggcggagtatacactgaatcagcccaacttaattta
gcagatcgcttacataagcaaatttttgagcaattacaagctctgaggttgagttacttt
gctcaaactcgttcgggtgaactcattaatacgattactacagagattgaaagaatcaaa
cagggttttagtgggttggcttttgtgttaacccgaatcatgactgtttgcgtttacttt
gttgtgatgttttctatatcatggcaactttcgattatttctgtgctgatatttttactg
ttagcagtgggattatccacgctgaataagcgagtcagagaaaccagttttggcatttcc
catgctaatgctcaatttacagctacagcagtagagtttatcaatgggattcggacaatt
caagcctttgggacacaggaatttgaacgtcaacgtttctataaagccagtactaatcaa
ctgaatgcagctatcaaagttgtcttagcttggacactagtaaaacccatagctgaaggc
atagctactacagttttgattagtttgattgtgatttccttcacgacatttacattacca
gttgcctcattattgacattcttctttgttttagtcagagtgattcccaatattcaagat
attaacggtacggttgcttttctgagtactttacaagggtcatcagaaaacattaaaaat
attttgcagacgaataataagccttacttgaaagatggtaaacttcattttcaaggtttg
aagcgttcaattgatttagtatctgtagattttggttatactgccgataatttggtattg
aataatatcaccctgacaattgagcgtggtaaaacaacagccctggtaggtgcatcgggt
gcgggtaaaactacattagctgatttaattccccgattttacgatccgacagagggacag
attttagtagatggactggatgtgcagtactttgaaatcaattccctccgtcgcaaaatg
gctgtagttagtcaagatacatttattttcaacacttctattagagacaatatcgcctac
ggtacatctggggcgagtgaagccgaaattagagaagcagcgcggctagcgaatgcgttg
caattcattgaagaaatgcccgaagggtttgatactaagttaggcgatcgcggtgtccgt
ttatctggaggacaaagacaacggattgcgatcgctcgtgcattactgagagatcccgaa
atcctcatcctcgacgaagctaccagcgccctagattcagtctccgaacggttaattcag
gagtctatagaaaaactttccgtgggtagaacagtaattgcgatcgctcacagactctcc
acaatcgccaaagcagacaaggttgtggtgatggaacaagggcgaattgtcgagcaagga
aattatcaagaactcctagaacaacgcggaaagctttggaaatatcaccaaatgcaacat
gaatcaggacatagtcaatag
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