KEGG   Trichormus variabilis: Ava_1156
Entry
Ava_1156          CDS       T00277                                 
Name
(GenBank) Type I site-specific deoxyribonuclease HsdR
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
ava  Trichormus variabilis
Brite
KEGG Orthology (KO) [BR:ava00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:ava02048]
    Ava_1156
Enzymes [BR:ava01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     Ava_1156
Prokaryotic defense system [BR:ava02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   Ava_1156
SSDB
Motif
Pfam: SWI2_SNF2 ResIII HSDR_N T1R_D3-like SNF2-rel_dom
Other DBs
NCBI-ProteinID: ABA20780
UniProt: Q3ME06
LinkDB
Position
complement(1412992..1415916)
AA seq 974 aa
MPKPGEQKTVQSRIITYAQEIGWTFVSREEAETRRGFNNHSGNIQEKAQQASLFFDDTLY
QKVRQFNPKYTEAQGVLIALLSNLPADIYGNRDFLTYLRNQGKYFYAPENRELDLKLINY
DDTTENSYEVTEEYYIHNGKYGTREDVVFLINGIPILVIECKNATKDEAIALGVDQIRRY
HTETPELFVPQMIFTATEAIGFSYGVTWNIVRRNIFNWKAEQIGQLEAKIKSFCQPNYIL
QFLQNYILFAEKEETLQKFILRQHQTTAVEKVIERCHDPEHSKGLVWHTQGSGKTFTMIK
TAEMLFKAPQSDKPTILLMIDRNELEDQMLRNLINLGLNNVQHADRITTLNQLLKDDYRG
IIVTMIHKFRDMPANINLRKNIYILIDEAHRTTGGDLGTFLMAGLPNATFIGFTGTPVDK
TSYGKGTFKTFGTDDKKGYLHKYSIAESIEDGTTLPLYYNIAPSKIIVPKELMEKEFLNL
AETEGISDIAELNKILDRAVNLKNFLKGNQRVDQVAKYVAKHYTQNVEPLGYKAFLVAVD
RPACAKYKQALDKYLPPEYSAVVYTGNNNDTQELKTYHLDDKTEKQIRKNFAKFGEYPKI
LIVTEKLLTGFDAPLLYAMYLDKPMRDHTLLQAIARVNRPYESEAQEMVKPHGFVLDFVG
IFNKLEKALAFDSDEINAIIKDLKLLKTLFKNKMEQQASTYLSLIQNNFNDKDVDDIIEH
FREQERRKAFSKAYKELEMLYEVISPDAFLRPYMDDYATLSSIYEVIRKAYSKRVYVDKA
LQRKTDELVQKHIGTTAIATVTDFVEINAQTLEVIKDKQGGETTKVINLIKSIEKTAEEN
PDDPFLIAMAERAKIVQEKFENRQSDTQEALDTLVKEIGENEQRKKEQAKRGFDSLTFFV
FQTLQDAGIDNPEAVSNQIKQAFIEYPNWRISEAELRELRKEVTFAIFAEIDELDQVTAV
VDKLFMLLSQAYSS
NT seq 2925 nt   +upstreamnt  +downstreamnt
atgccaaaaccaggggaacagaaaactgttcaaagcaggataattacttacgctcaagaa
attggctggacatttgtatctcgtgaagaagcggaaaccagacggggttttaataatcac
agtggtaacattcaagagaaggcacaacaagcatccctgttttttgacgataccctctat
caaaaagtccgccagtttaaccccaagtataccgaagctcaaggcgtacttattgcgcta
ctgagtaacctacctgccgacatctacggaaatagagacttcctaacttatctccgcaac
caaggcaaatatttttatgcccctgaaaatcgggaactcgatctaaaactcatcaactac
gatgacaccaccgaaaactcctacgaagtaacggaagaatactacattcataacggcaag
tacggtacacgggaagatgtagtctttttaatcaacggtattcctatcctcgtcatcgaa
tgcaaaaacgctactaaagatgaagcgatcgcattaggtgttgatcaaattcgtcgctac
cacaccgaaacaccagagttattcgttccccagatgatttttaccgccactgaagccatt
ggcttttcgtatggggtgacgtggaatattgtcaggcgcaacatttttaactggaaagca
gaacaaatcggtcaactagaagcaaaaattaagagtttttgtcaacctaactatattctc
caattcctgcaaaattatattctctttgcagagaaagaagaaactctgcaaaaatttatt
ctgcgtcaacaccaaaccaccgcagttgaaaaggtaattgaacgctgtcacgatcctgaa
cacagcaaaggacttgtctggcatacccaaggcagtggtaagactttcacaatgattaag
acggcggaaatgctctttaaagccccacagagcgataaaccgacaattctgctgatgatt
gaccgcaacgagctagaagaccaaatgctcagaaacctaattaacttaggactgaataac
gttcaacacgctgatcgcattaccacccttaatcaactactaaaagatgattatcgtggc
attatcgtcaccatgatccacaaattccgcgatatgcctgccaatattaatctaagaaaa
aatatttatattctgattgatgaggcacaccgcaccaccggaggagatttaggaactttc
ttaatggcaggactccctaatgccacttttatcggatttactggtacacctgtagataaa
actagctacggtaaaggcacatttaaaaccttcggcacagacgataaaaaggggtatctg
cataaatattccattgcagaaagtattgaagacggaacaacactacccctttactacaat
attgctcccagcaagataattgtgccaaaggaactcatggaaaaggagtttctcaacttg
gcagaaactgaggggattagcgatattgccgaattaaataaaattttagatcgtgccgtt
aatttaaaaaacttcctcaaaggtaatcaaagagtagatcaggtagcaaaatatgttgcc
aagcattacactcaaaacgtagaaccactaggttataaagcttttttagtcgctgttgac
cgtcctgcctgtgctaaatataaacaagctttagataaatatttacctcctgaatactcc
gcagttgtctataccggaaacaataacgatactcaagaactcaaaacctaccacctcgac
gacaagacagaaaaacaaatccgtaaaaacttcgccaaatttggagaataccccaaaatc
ctgattgttaccgagaaactgttgacaggatttgatgctcccctgctttatgccatgtat
ctcgataagcccatgcgagatcataccttgttacaggcgatcgctcgtgtgaatcgtccc
tacgaaagcgaagctcaagagatggtgaaaccgcatggttttgtgctggattttgtaggc
attttcaacaaactagaaaaagcacttgcctttgacagcgatgaaatcaacgctattatc
aaagatttgaaactgctcaaaactttattcaaaaataaaatggagcagcaagcctcaact
tatttgagcttgattcagaacaattttaacgataaagatgtagatgatattattgagcat
tttcgagaacaagaacgcagaaaagcattttctaaagcctataaagaactagaaatgctc
tatgaagttatttcccctgatgctttcctacgtccctacatggacgattacgccaccctt
tcctctatttatgaagtaatccgcaaagcttacagcaaaagggtttacgtcgataaagcg
ttgcagcgcaaaactgatgaactcgtacaaaaacatattggcacaacagcgatcgcaact
gtaacagattttgtagaaatcaatgctcaaaccctcgaagtcatcaaagacaagcaagga
ggtgaaaccaccaaagtcatcaacctcatcaaaagcatcgaaaaaactgccgaagaaaat
cccgatgacccttttctcattgcaatggcggaacgtgccaaaattgtccaagaaaagttt
gaaaatcgccagtccgatacccaagaagccttagatacgttggttaaagaaattggtgaa
aatgagcagcgcaagaaagaacaggctaaacgtggttttgacagcttaacgttttttgtc
tttcaaaccctacaggatgcaggtattgataatcctgaagcagtaagcaatcaaattaaa
caagcttttatagagtatcccaattggcgcatcagtgaggcagaattgagagagttgcgg
aaagaagtcaccttcgccatttttgctgagatcgatgaattggatcaagtgacagcagtt
gttgataaactttttatgttgctaagtcaagcttactcaagctaa

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