Trichormus variabilis: Ava_1188
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Entry
Ava_1188 CDS
T00277
Name
(GenBank) Cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporters
KO
K11004
ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
Organism
ava
Trichormus variabilis
Pathway
ava02010
ABC transporters
ava03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
Ava_1188
03070 Bacterial secretion system
Ava_1188
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ava02000
]
Ava_1188
02044 Secretion system [BR:
ava02044
]
Ava_1188
Transporters [BR:
ava02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB-BAC subgroup
Ava_1188
Secretion system [BR:
ava02044
]
Type I secretion system
alpha-Hemolysin/cyclolysin transporter
Ava_1188
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
cNMP_binding
SMC_N
AAA_22
Peptidase_C39
DUF87
ABC_ATPase
AAA_29
AAA_30
RsgA_GTPase
AAA_23
Ploopntkinase3
AAA_16
PRK
AAA_18
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
ABA20812
UniProt:
Q3MDX4
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All DBs
Position
1460750..1463761
Genome browser
AA seq
1003 aa
AA seq
DB search
MTYIKSAFQEFLVTIEGFDQLPSEELTQILDNLQPFRYRIGQKIIGKERTPERVTIIYEG
QVRLLGFDPQTQVPTTLKLMKPGEIIGEIGLLRDVACETAIASADEVIGLTLNATDYLRL
LESYPGFAHARQNQSYIIEVFDVLSSQLANQANVISNLDELAAQALENAKIDYLPPGRNF
FHQLDSESIWFVSGGTVTNYPIGSRLEPSDGNRVIEVQGESPARLVGLEPLDLLFLENDY
HQGGELTVYDSSPKITEALDIPYASEEELSQSSSVPSNAKPRQKFPFVRGKGELNSTFAC
FQMLTKHLQIPFRKEVVRRILNEQMKRQGTISFPACAYLSELIGLKANLVDLPAAAITRV
PTPALVRYGDGYAVLYAADANNVVLGVPSQGIVRCKPAQILEHLNIVEDSYPPQIRVLLL
SATKETPQERFGLRWFIPYLSRYRRVLIEVFIASFFVQLAALANPLVIQLIIDKVIVQNS
ISTLNVLGVLLLAVGVFEAVLTTLRTYLFVDTTNRIDMGLGSEIIDHLLRLPLRYFEKRP
VGELATRINELENIRQFLTGTALTVGLDAVFSVVYIIVMLFYSWQLTLVGLGTIPIFIVI
TLIASPTVSRQLRSKAERNSETQSYLVEVMSGIQTVKAQNIELRSRFSWQERYARYVAAG
FKNVITSTLANSTSQFLNKLSSLLVLWVGSYLVLQGELTLGELIAFRIISGYVTSPILRL
AQLWQSFQETALSLERLSDIVDTPQEAEIDRYNIPLPEIQGSVKYENISFRFAPSGPLQL
SNVNLEIPSGKFIGIVGQSGSGKSTMMKLLLRLYDVESGRILIDGYDIAKVELYSLRRQV
GVVPQETLLFDGTVQENIALTNPDASTDEIIEAARVAAAHEFIMSLPNGYNTRVGERGAG
LSGGQRQRIAIARSVLQRPKLLVLDEATSALDYPTERQVCLNLAKAFQGSTVFFITHRLN
TVSHADMIVVMDAGKVIEQGSHQELMAAKGHYFYLYQQQEVNL
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atgacttatattaagagcgcttttcaagaatttcttgtcaccattgagggttttgaccag
ttaccaagtgaggaactgactcaaatcctcgataatctacagccatttcgctatcgcatt
ggtcaaaaaattattggcaaagaaagaacacccgaacgagtaacaattatttatgaaggt
caagtgcggctgttgggatttgatccgcaaacgcaagttccgacaaccctcaagttgatg
aaaccaggggaaatcattggcgaaattgggttattgcgggatgtggcttgtgaaactgcg
atcgcctctgccgatgaagtgataggcttaaccttaaatgccacagactacctacgtttg
ttggagtcatacccaggttttgctcacgcacgccaaaaccaaagttacatcattgaggtt
ttcgatgttctgagttcccagttagctaaccaagctaacgtgattagtaaccttgatgaa
ctggctgcacaagctctagaaaatgccaaaatagattaccttccaccagggagaaatttc
ttccatcaattagatagtgaaagcatttggtttgttagtggcggaacagtcacaaattac
cccataggttctcgcctagaacctagtgatggaaatcgggtaattgaagtccagggagaa
agtccggcgcggttagttggtttagagcctttagatttattgtttttagagaacgattat
caccaaggtggagaacttaccgtctatgatagttcacccaaaattacagaagctttagat
attccctatgctagcgaagaagaactttcgcaatcaagttctgttcccagcaatgctaaa
ccaagacaaaaattcccctttgttcggggtaaaggtgaactaaattctacctttgcctgt
tttcaaatgctcaccaagcacctacaaattcccttccgcaaagaagtagtgcggcgcatt
ttaaatgagcaaatgaagcgtcaaggaaccatctccttccccgcttgcgcttacctctcc
gagttaattggactcaaagccaatctagttgatttaccggcggcggctattacccgtgtt
cctaccccggccttagtccgttatggtgatggttatgcggttttgtatgcggcggatgcc
aataatgtagttttaggtgtaccgtcccaagggatagtacgctgcaaacccgcacagata
cttgagcatttaaatattgtcgaagacagttatcccccacaaattagggtattgctgctg
tctgctaccaaagaaacgccacaagaacgctttggtttacgttggttcataccttactta
tcccgctaccgccgagttctgattgaagtttttatcgcttctttctttgtgcagttagcg
gccttagccaatcctttggttattcagctcatcattgataaagtcatcgtccaaaacagt
attagcaccctgaatgttttgggagttttgctgttagccgttggggtatttgaagcagtt
ctcaccaccttaaggacttacttatttgtcgatactaccaaccgtatcgatatgggtttg
ggttcagaaattattgaccacctattacggctaccactgcgctactttgaaaagcgtcca
gtgggtgaactggctacccgcatcaacgaattagaaaatattcggcagtttctcactggg
acagcgttgacagtaggtttagatgcggtcttttccgtagtttatatcattgtcatgctg
ttttatagctggcaacttaccttagttggtttaggaacgattcccatatttatcgttatc
accttaattgcatcgcctacggtgagtagacagttacgttccaaagccgaacgcaactca
gaaacccaatcctatttagttgaggtgatgtctgggattcaaacagtgaaggcgcaaaat
atcgaattgcgatcgcgcttttcctggcaagaacggtatgctcgatatgtagcagcaggg
tttaaaaatgtcatcacatcaaccctcgctaactctaccagtcaatttctcaacaaactc
agcagtttacttgtgttgtgggtaggttcttatttggtactccaaggtgaattaacttta
ggggaattaatcgcctttagaattatctctggttacgtcaccagtcctatcttacgctta
gctcaactctggcaaagcttccaagaaacagcattatccctagaacggttgagcgatatc
gttgatacgccccaagaagccgaaattgaccgctacaatattcccttaccggaaattcaa
ggctctgttaaatacgagaatatttcctttaggtttgcaccaagcggccctctacagcta
tccaacgtcaatttagaaatcccctctgggaaatttatcggtattgtcggacaaagcggc
tctggtaaaagtacgatgatgaaattactgctgcgcttgtacgacgtagagtccggccga
attttaattgatggttacgatattgccaaagtagaactatattcattacgtcgccaagtc
ggtgtagtaccccaagaaaccctgttatttgacgggacagtgcaagaaaatattgctctg
acaaatcctgatgctagcactgacgaaattatcgaagcggcgcgagtagcagcagcccat
gagtttattatgagcttacccaacgggtataatacccgcgtcggcgagcgtggggctgga
ctttctgggggacaaagacagagaatagcgatcgcccgttctgtcctccaaagacctaaa
ctattagtattagacgaagctaccagcgctctagactatcctacagaacgacaagtttgc
ctcaacttagctaaagcctttcaaggtagcacagtattcttcatcacccaccgcctcaac
accgtcagtcatgcagacatgattgtggtcatggacgcagggaaagttatagaacaagga
agccaccaagaattaatggcggctaaaggtcattatttttacctgtaccaacaacaggaa
gtaaatttgtaa
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