Trichormus variabilis: Ava_1281
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Entry
Ava_1281 CDS
T00277
Name
(GenBank) Ribonuclease E and G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ava
Trichormus variabilis
Pathway
ava03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ava_1281
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ava03019
]
Ava_1281
03009 Ribosome biogenesis [BR:
ava03009
]
Ava_1281
Enzymes [BR:
ava01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Ava_1281
Messenger RNA biogenesis [BR:
ava03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Ava_1281
Ribosome biogenesis [BR:
ava03009
]
Prokaryotic type
rRNA processing factors
Ava_1281
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DUF6863
Motif
Other DBs
NCBI-ProteinID:
ABA20905
UniProt:
Q3MDN1
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All DBs
Position
1570487..1572550
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AA seq
687 aa
AA seq
DB search
MPKQIIIAEQHQIAAVFSEDQIQELVVATGHHQIGDIYLGVVENVLPGIDAAFVNIGDPE
RNGFIHVTDLGPLRLKRTAAAITELLAPQQKVLVQVMKEPTGTKGPRLTGNITLPGRYVV
LMPYGRGVNLSRRIKSESERNRLRALAILIKPAGMGLLVRTEAEGKPEEAIIEDLEVLQK
QWEAIQQEAQSTRAPALLNRDDDFIQRVLRDMYGADVNRIVVDSSTGLKRVKQYLQNWSG
GQTPQGLLIDHHRDRSPILEYFRINAAIREALKPRVDLPSGGYIIIEPTEALTVIDVNSG
SFTRSATARETVLWTNCEAATEIARQLRLRNIAGVIVVDFIDMESRRDQLQVLEHFNKAL
RADKARPQIAQLTELGLVELTRKRQGQNIYELFGDTCPACGGLGHTVRLPGETENRLPTP
AAEIPERFVSLPTREPRLPTARISEPRETYDGFGEAFENDSDLGALNLINHPSYQELNDN
NKRRARTRRSRIGINGTNGKDEQRITANPLAFINESDLDLDGDVELSAPPELPTPNLGKS
GWIERAERTKVIKTEPVKPVVEPPEIKTVEMTPEEQDIFALMGISPLIKLEQEVKNPKSV
IINIVQPGQTPTIPTEITPEPVAKTTPSVEVSTPKVKLESKSVSVTATEPIKLTETTEES
EVNAASTANRRRRRRSSASDSDTGEDS
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaacaaattattatcgcggagcagcatcaaatcgctgctgtattttcggaagac
caaatacaagaactcgttgtagccacaggccatcatcaaatcggtgatatctacttaggt
gtagtagaaaatgtattaccaggtattgatgcagcttttgtcaacatcggagatccagaa
cgtaatggttttattcatgtaacggatttaggccctttacgactcaagcgaacagcagca
gcaattacggaattattagcaccacaacaaaaagttttggtgcaggtaatgaaagagcca
acgggaacaaaaggcccaaggctcacaggtaatatcactttacccggacgttatgtggta
ctgatgccctatggtaggggtgtaaatttatcgaggcggattaagagtgaaagtgaacgt
aaccgtttacgagcattagcaattttaattaaacctgctggcatgggtttgctggtgcgt
acagaagcagaaggcaagccagaagaagcaatcatcgaagatttggaagtactgcaaaag
caatgggaagccattcaacaagaggcacagtcaactcgtgcgccagcactcctgaatcgg
gacgatgattttatccagcgcgtattacgtgatatgtatggtgcggatgtaaatcggatt
gtcgtcgattccagtactggtttgaagcgagtcaaacagtatttgcagaactggagtggc
ggtcagacaccacaaggattgttgattgaccatcaccgcgatcgctcccccattttagaa
tatttccggatcaatgccgcaattagagaagcgctcaaaccaagagtagacctaccttct
ggcggttatatcattattgagccaacagaagcattaactgtcatagatgtcaactcaggt
tccttcacgcgatcggccacagccagagaaactgttttgtggaccaactgtgaagccgca
acagaaattgctcgtcagctacgtctgcggaatatcgctggggtaatcgtcgttgatttt
attgacatggaatcacgccgtgaccagttacaagttctcgaacactttaataaagccctc
cgcgcagataaagctcgtccccaaattgcccaacttacagagctaggtttagtagaactg
actcgcaaacggcaagggcaaaatatttatgaattgtttggtgacacttgcccagcctgc
ggtggtttaggacatacagtccgcttacccggagaaacggagaaccgcttacctactcca
gcagcagaaattccagaacgttttgtatctctgcctacacgagagcctcgtttaccaact
gcacgcatcagcgaaccacgagaaacctacgatggatttggtgaagcgtttgaaaacgac
tctgacttgggtgctttaaatttaattaatcatcctagctatcaagaactgaacgataac
aataaacgtcgcgcccgtacccgtcgcagtcggattggcatcaatggtacaaatggcaaa
gatgaacaaagaattactgccaacccactagcttttatcaatgagtcagatttagacctt
gatggagatgttgaattaagcgctccaccagagttacccacacccaacctgggaaaatct
ggctggattgaaagagcagaacggactaaggttattaaaacagagccagttaagccagtg
gtggaaccaccggagattaagactgtagaaatgactccagaagaacaagatatttttgct
cttatggggatttctccgctaattaaattagagcaggaggtgaaaaatcctaaatccgtc
attattaacattgttcaaccgggacaaacaccaactataccgactgaaataactccggag
ccggtggctaagacaacaccaagcgttgaagtgagtacaccaaaagtaaagctggaatct
aagtctgtgtcggtaacggcaactgaaccaataaagttgacagaaacgacggaagaatct
gaagtgaatgccgctagcactgctaaccgtcgccgtcgtcgtcgttcttccgcttccgac
tcagatacgggagaggatagttaa
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