Trichormus variabilis: Ava_1322
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Entry
Ava_1322 CDS
T00277
Name
(GenBank) Ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ava
Trichormus variabilis
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ava03016
]
Ava_1322
Enzymes [BR:
ava01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Ava_1322
Transfer RNA biogenesis [BR:
ava03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Ava_1322
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD_RNase_II
HTH_RNase_II
Motif
Other DBs
NCBI-ProteinID:
ABA20946
UniProt:
Q3MDJ0
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All DBs
Position
1619736..1621796
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AA seq
686 aa
AA seq
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MEKGTLVEFRVQGDRRLGVVDRPDGKTRWFVVDERGQSHSLAPRQITYTVNGNTYKPSDI
DRFLEEVKPYLDPSSLEVAWELLVEDGETVTPSQMANLLFSESNSAPSYAAHCLLSDDKL
YFKQKGDAYEPRTAAQVAERKHQIEVEALKARGQQEFLTRVEQALQGEAVEWQRHDRQRL
EGLEKYGTLLADIVKVGLNYDSLARAYPPPALVLETMNMLGRPATPQGAFQLLVDLGWWS
ATENLFLRRSSIPVQFPSKVLEVAQQRLDFPPTDLDTNRLDLTHLKVYTVDDESTTEIDD
GLSWEKLPDSRERLWVHIADPTRYLAPEDDLDLEARKRGSTVYLPTGMIPMFPEILATGP
MSLVQGRVCCALSFGVVLDETGAVEDFTIHPSLIKPTYRLTYEDVDEMLELGVQAEPEIA
AIATWATKRKSWRYNQGAISINMPEAMIKVKNDDISIDILDDSRSRQLVAEMMILAGEVA
ARYGQVHNIPLPFRGQPQPELPPEDELLRLPAGFVRACAMRRCMPKSEMSITPVRHAGLG
LDTYTQATSPIRRYSDLLTHFQLKAHLRGEVPPFTAEELKEVMMTVTSTTQELTMVERQT
NRYWALEYLRRHPEEIWQVTVLMWLREDSNLALILLEDLGLQLPMVFKRSVRLGEQVLVK
VSISDPQKDVIQFQEIIYQEAQTAAN
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
gtggagaaggggacgctagttgaatttagggttcaaggcgatcgccgtttgggcgtggta
gaccgcccagatggaaaaacccgttggtttgtggtagatgaacgtggtcaatcccacagc
ctcgcgcctagacaaattacatatacagttaacggcaacacttataagccatcagatatt
gacaggtttttggaggaagtcaagccttatctcgacccctccagcttagaagtggcctgg
gaattactagtagaagatggagaaacagtcacgccatcccaaatggctaatttactgttt
tcagaatccaactcagctcccagttatgctgctcattgcctgttatcagatgacaagtta
tattttaaacaaaaaggtgatgcttacgaaccgagaacggcggctcaagtagcagagcgc
aaacaccagatagaagtagaagccctcaaagctaggggacagcaggaatttttgacgcgt
gtagagcaagcactccaaggggaagcagtagagtggcagcgtcatgaccgccaacgccta
gaaggattggaaaagtatggaacacttttggctgacattgtaaaggtggggctaaactat
gattctctggcgcgtgcctatcctcccccagccctagttttagaaacaatgaatatgctg
gggcggcccgcgaccccccaaggcgcttttcaattactggtagatttggggtggtggagt
gccacggaaaacttgttcctgcgtcgttcgtcaattccagttcagtttcctagcaaggta
ttagaagtggcgcaacagcgtttggatttcccgccgacagacttagacacaaatcgcctc
gatttgactcacctgaaggtctacacagttgacgatgaaagcaccactgaaatagatgat
ggattgagttgggaaaaactccccgatagccgggaaagattgtgggtgcatatcgccgac
cctacccgctacttagcaccagaagatgatttagacctagaagccaggaagcgaggtagc
acagtttatttacccacgggaatgatccccatgttccccgaaatattggcaactggcccc
atgagtttggtacagggaagagtttgctgtgctttgagttttggggttgtcttagatgag
acaggggcagtagaagactttactattcatcctagtttaattaagcctacctatcgcctc
acctacgaagatgtagatgaaatgttggaattaggcgtacaagcagaaccagaaattgcg
gcgatcgctacttgggcaactaagcgcaaatcttggcggtataatcaaggcgcgatcagc
atcaatatgccggaggcgatgattaaagtcaaaaatgacgatatcagtatcgacatttta
gatgattcccgttcccggcagttagtagcagaaatgatgattctagccggggaagtggca
gcacgttacggtcaagtacacaacatacccttgccctttcgtggtcaaccacaaccggaa
ttacccccagaagacgaattactcagactgccagccggatttgtccgtgcttgtgccatg
cggcgttgtatgcccaagagtgaaatgagtattactcctgtgcgtcacgctggtttaggt
ttggatacctacacccaagctacatctccgattcgccgctacagtgacttactcacgcac
tttcaactcaaagcccacctgcggggtgaagttcctccctttaccgccgaagaactcaag
gaagtgatgatgaccgtcaccagcaccacccaagagctgacaatggtagaacgtcagacg
aatagatactgggcgttggaatatttgcgccgccatccagaagagatttggcaagtaaca
gtcctcatgtggttacgggaggatagtaacttagcactaatattgttagaagatttgggt
ttacaattaccgatggtattcaagcgatcggtgagactcggtgaacaggtattagtaaaa
gttagtatctccgatccgcaaaaggatgtaattcagttccaagaaataatttatcaagaa
gcccaaacagcagcgaattag
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