Trichormus variabilis: Ava_1709
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Entry
Ava_1709 CDS
T00277
Name
(GenBank) Exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
ava
Trichormus variabilis
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ava03400
]
Ava_1709
DNA repair and recombination proteins [BR:
ava03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Ava_1709
Archaeal homologous recombinant proteins
Ava_1709
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_15
SMC_N
SbcC_Walker_B
Rad50_zn_hook
AAA_27
AAA_29
AAA_21
RsgA_GTPase
Motif
Other DBs
NCBI-ProteinID:
ABA21331
UniProt:
Q3MCF5
LinkDB
All DBs
Position
complement(2142223..2145249)
Genome browser
AA seq
1008 aa
AA seq
DB search
MIPVQLVLKNFLSYRDATLDFRGLHTACICGANGAGKSSLLEAITWALWGESRAAVEDDV
INSGEKEVRVDFTFQNNQQKYRVIRSRIRGASGILEFQIETPSGFRAITGKGVRATQDLI
LEHIKLDYETFINSAYLRQGRADEFMLKRPSERKEILAELLKLNQYDELEERAKDSSRQF
KVRAEELERSLESIKTQLQQRENTKAQRAELEAEINQLQQVQAFETIQLQSLQVIQHQRQ
NSEQQLNFVRQQYQNLTQDSDRLQQEQSAVKTQLAELEAILHREAEIQNGYSHYQSLQSQ
EEVFAVKFDEHTRATALRQQKQQQLTKQIHELERQLQQVQGQLEALKQQEQEIQHTLSKS
GEIEAALAQLAAARRHLAHLDELQMQVSPLLQQRQHLQSHLDRVHAGLVARLEQLQATEN
QLQRASQRQPQLQQAVMEVAMQIDQMEKDRVYLQRVQEKGHERRNFIERLQAQQREYERL
LGEMEQKLQMLRTPDAICPLCERPLDEHHWNRVVDKTKDEYKETEGQLWVFREQMAVSDR
EIQVLRQEYREISQKLNAYDALREQRGQLAAQLQSTSDAEQQLQQLAAEKQHLERSLQVG
DFALDQQAELRQLEQYLQQLNYNEQDHALARSEVERWRWAEIKQGQIKDASKRLATLAAR
KPELQAQITQLQTRIQQEQTDSEDAQQIAALEEQIAELGYSSEQHNNLRLAVRQSQAWQL
RYQQLLSAQQQYPQLQGRLQDLEVSKLARLQERQQLATQIDSLVEQLAQAANPREQIQAL
EQQLATRRRQLDEQITQLGRLEQLAHQLETLQTQYEEQQQQYQTCKQQYRVYQELAQAFG
KNGIQALMIENVLPQLEAETNQLLSRLSANQLHVQFITQRAGKGSKSTKKNAKLIDTLDI
LIADARGTRAYETYSGGEAFRINFAIRLALAKLLAQRAGAALQLLIVDEGFGTQDAEGCD
RLIAAINAIANDFACILTVTHMPHLKEAFQARIEVDKTQQGSRIRLLT
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atgattccagtacaacttgtcctaaaaaattttctgagttaccgtgatgcaactttagat
tttcgtggtttgcatacggcttgtatttgtggtgccaatggagcaggtaaatcgtctctc
ctggaagccatcacatgggcgctatggggtgaaagtcgtgcggcggtggaagatgatgtg
atcaattctggtgaaaaagaagttagggttgattttacttttcaaaataatcagcaaaaa
tatcgcgtaattcgcagtagaattcggggtgcatcggggattttggaatttcaaatcgaa
acaccctctggcttccgggcaattactggtaaaggtgtccgcgccacccaggatttgatt
ttagaacacatcaagcttgattatgagacttttattaactctgcttacctacgtcaagga
agagcagatgaatttatgctcaagcgtcccagtgaacgcaaggaaattttggcggagttg
ttgaaactaaaccaatatgatgagttggaagaacgagccaaagattcatcgcgtcaattt
aaagtgagggcggaagaattagaacgttctttggagtcaattaaaactcagttacaacaa
cgggaaaacaccaaagcccaacgggcagaattagaagcggaaattaaccaactgcaacag
gtacaagcctttgagacgattcaattgcagagtttgcaggtgattcaacaccagaggcaa
aatagcgaacagcagttaaattttgtgaggcaacaataccaaaatcttacacaagatagc
gatcgcctccaacaagaacagtcagcagtcaaaacacagttagctgagttagaagctatc
ttgcaccgggaagcagagattcaaaacggctacagccattaccaaagtctgcaatcccaa
gaagaagtatttgctgtcaagtttgacgaacatacccgcgccacagccctacgccaacaa
aagcagcaacagttaactaaacaaattcacgaactggaaagacaactccaacaagtccaa
ggacaattggaagccttaaagcaacaagaacaagaaattcagcacaccttgagcaaatcc
ggggaaatagaagccgccttagcccaactcgccgccgcccgtcgccatttagcgcaccta
gatgaactgcaaatgcaggtttcccctttgttgcaacagcgccaacatctacaaagccat
ttagaccgggttcatgcggggttagtcgccaggctcgaacaactacaagccacagagaat
caattgcaacgagcctcccaacgccaaccccaactgcaacaagcggtcatggaagtggcg
atgcaaattgatcaaatggagaaagaccgggtttatttgcaacgggtgcaggaaaaaggc
cacgaaagacggaattttatagaacgtctgcaagcccaacaacgggaatatgaaagatta
ttgggagaaatggagcagaaattgcaaatgctccgcacccccgatgctatctgtcctttg
tgcgaacgtcctttagatgaacatcattggaatcgggtagtagataaaaccaaagatgag
tataaggaaaccgaggggcaattgtgggtgtttcgtgagcagatggcagtttccgataga
gaaattcaggtattaaggcaggaatatcgggaaatatcccagaaattaaatgcttacgat
gcgttacgagaacaacgaggacaattagctgcccaactgcaatctaccagcgatgctgaa
caacaattacaacaattggcagccgaaaaacaacacttagagcgatcgctgcaagttggt
gattttgcccttgatcaacaagctgaattgcggcaattagaacaatatctgcaacaatta
aattacaatgagcaagaccatgccctggctcgtagcgaagtggaacggtggcgatgggca
gaaattaagcaagggcaaatcaaggatgctagcaaacgcctggcgacattagcagcccgt
aaaccagaattacaagctcaaattacccaactacaaaccagaatccagcaggagcaaact
gattcggaagatgctcaacaaatcgcagcccttgaggagcaaatcgcagaacttggttat
agttctgagcagcataacaacctacgtctcgcggtgcgccagtcccaagcttggcagttg
cgttaccagcagctgttatcagcccagcaacagtatccccaactccagggcagattgcaa
gatttggaagtctctaaacttgccagattgcaggaaagacaacaactcgccacccaaatc
gatagccttgtggagcagttagcccaagccgctaaccccagggagcaaattcaagcttta
gaacaacagttagccacaagacggcgacaactagacgaacaaatcacccagttaggacgt
ttagaacagttagcccatcagttggaaacactgcaaactcaatatgaggagcagcagcaa
caataccaaacttgcaagcagcaataccgggtatatcaggaattagcccaggcgtttggt
aaaaatggtatccaagctttgatgattgagaacgtgttgccccaactagaagccgagaca
aatcaacttttatccaggctgagtgcgaatcaactgcacgtacaatttattactcaaaga
gcaggaaagggcagtaaatctaccaagaaaaatgccaaactcatagataccttagatatt
ctcattgccgatgccagaggtacaagagcttatgaaacctactccggtggggaagctttt
agaattaactttgcgattcgtttagccttagcgaaactattagcccaaagagccggagcc
gcattgcaactattgattgtagacgaaggttttggtacacaagatgcggaaggatgcgat
cgcctcattgctgccattaatgcgatcgctaacgatttcgcctgcatcctcactgttacc
catatgccccaccttaaggaggcgtttcaagccagaattgaggtagataaaacgcaacag
gggtcgaggattcggttgttaacttaa
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