Trichormus variabilis: Ava_1870
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Entry
Ava_1870 CDS
T00277
Name
(GenBank) NusA antitermination factor
KO
K02600
transcription termination/antitermination protein NusA
Organism
ava
Trichormus variabilis
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ava03021
]
Ava_1870
03009 Ribosome biogenesis [BR:
ava03009
]
Ava_1870
Transcription machinery [BR:
ava03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
Ava_1870
Ribosome biogenesis [BR:
ava03009
]
Prokaryotic type
rRNA transcription factors
Ava_1870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NusA_N
KH_5
KH_NusA_C
KH_2
KH_1
Carb_kinase
Motif
Other DBs
NCBI-ProteinID:
ABA21492
UniProt:
Q3MBZ4
LinkDB
All DBs
Position
complement(2322023..2323300)
Genome browser
AA seq
425 aa
AA seq
DB search
MSMVSLPGLKDLIESISRERNLPRLAVQAAIREALLKGYERYRRAQNIERKQFDEDYFDN
FEVELDIDEEGFRVLSTKSIVEEVNNSDHQISLDEVQQVAPEAQLGDSVVLDVTPDQGEF
GRMAAMQTKQVLAQKLRDQQRQMVQEEFQDLESTVLQARVLRFERQSVILAVSSTFGQPE
VEAELPKREQLPNDNYRANATFKVYLKKVSQGQQRGPQLLVSRADAGLVVYLFANEVPEI
EDEVVRIVAVAREANPPSRYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGE
KIDVIRWSPDPATYIANALSPARVDEVRLMDPETRQTHVLVAEDQLSLAIGKEGQNVRLA
ARLTGWKIDIKDKAKYDQAAEDAKFVAARAKYQLEEDDIESEELDYEENQEGELEDESFD
PNDEE
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatggttagtttaccaggattaaaagatttaatagaaagtattagtcgtgaacgg
aatttgccccggttagcggttcaagctgctattagagaagccttacttaagggttatgag
cgttatcgtcgcgctcaaaacatcgagcgcaaacagtttgatgaagattattttgataac
tttgaagtcgaactagatattgacgaggaaggatttcgcgttctttccacaaaatccatt
gttgaagaagttaataattctgaccatcaaatctccttagatgaagtacagcaagtagct
cccgaagcccaattgggagactcagtggtactagatgtcaccccagaccaaggtgaattt
gggcgcatggctgccatgcaaaccaagcaagtactggcgcaaaaactgcgggatcaacag
cgccagatggtgcaagaagagttccaagacctagaaagcacagttctccaagccagagtt
ttgcgatttgagcgccaatcagtcattctggcagttagcagtacctttggacaaccagaa
gtagaagccgaattgcccaaacgcgaacaattgcccaacgacaattatcgggcaaatgcc
acatttaaggtttatctcaaaaaggtttcccaaggtcagcaacgcggcccacagttatta
gtctcccgtgctgatgcaggtttagtagtttatctatttgccaacgaagtaccagaaatt
gaagacgaagtggtacggatagttgccgtagccagggaggcaaaccccccttcccgctat
gtaggcccaaggactaaaatagcagtagataccctggatcgtgatgtagaccccgtaggg
gcttgtattggtgctaggggatcacgcattcaggtagtagtcaacgaattacgcggcgaa
aaaattgacgtgattcgctggtctccagacccagcaacatacattgctaatgccctcagt
ccggcgcgagtcgatgaagtgcgcctcatggacccagaaactagacaaactcacgtatta
gttgcggaagaccaactgagtttggctatcggcaaagaaggacaaaacgtgcgattagct
gcccgattgactggctggaaaatagacataaaagataaagccaagtatgaccaagcagcc
gaagatgctaaatttgtggcggcgcgtgcaaaatatcaactagaggaagatgacatcgaa
tcagaggagctagactatgaagaaaatcaagaaggagaattagaagacgagtcttttgac
cccaacgatgaagagtaa
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