Trichormus variabilis: Ava_1914
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Entry
Ava_1914 CDS
T00277
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ava
Trichormus variabilis
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ava03016
]
Ava_1914
Enzymes [BR:
ava01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Ava_1914
Transfer RNA biogenesis [BR:
ava03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Ava_1914
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
RD3
UPF0257
Motif
Other DBs
NCBI-ProteinID:
ABA21536
UniProt:
Q3MBV0
LinkDB
All DBs
Position
2376788..2377417
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AA seq
209 aa
AA seq
DB search
MTLQDFQVGDRDLSDAAVDQYLQSEAIAVDTETMGLLPQRDRLCLIQLCNPEGKVTAIRI
ARGQTAAPNLKKLLEATNVLKVFHFARFDVATLRHHLDIHVQPIFCTKIASKLARTYTNR
HGLKDLVYELEQVELDKSAQSSDWGNAANLTDAQLSYAANDVRYLLSAQQKLVAMLKREE
RWELAQQCFQVLPTIVSLDLLQFKDLFEH
NT seq
630 nt
NT seq
+upstream
nt +downstream
nt
atgacattacaagatttccaagttggcgatcgcgaccttagtgacgctgctgttgaccaa
tatttacaatcagaggcgatcgctgtcgatacagaaacgatgggattgttaccccagcgc
gatcgcctgtgcttaattcaactatgcaacccagagggtaaggtaactgcaatccgtata
gccagagggcaaaccgcagcgcctaatctcaaaaaactcctagaagcaacaaacgtcctc
aaagttttccacttcgctcggtttgatgtggctaccttgcgtcaccatctggatattcat
gtccagccaattttctgcaccaaaatcgccagtaagttagcccgcacttacaccaatcgc
cacggacttaaagatttggtgtatgagttggaacaagtagaactagataaaagcgctcaa
agttcggattggggaaacgctgcaaatttaactgacgcacaactcagttacgccgccaat
gatgtccgctatttactcagcgcccagcaaaagttagtcgccatgctcaaacgcgaagaa
cgctgggaactagcacaacaatgctttcaagtcctaccaacaattgtttctctagattta
ttacagttcaaggatttgtttgaacattaa
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