Trichormus variabilis: Ava_2372
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Entry
Ava_2372 CDS
T00277
Name
(GenBank) exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ava
Trichormus variabilis
Pathway
ava03410
Base excision repair
ava03430
Mismatch repair
ava03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Ava_2372
03430 Mismatch repair
Ava_2372
03440 Homologous recombination
Ava_2372
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ava03400
]
Ava_2372
DNA repair and recombination proteins [BR:
ava03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Ava_2372
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Ava_2372
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Ava_2372
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ABA21990
UniProt:
Q3MAJ6
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All DBs
Position
2951943..2954135
Genome browser
AA seq
730 aa
AA seq
DB search
MLDRPPTELSKPRRRLPNQRWQIHLQKTDLAQKLADAANLSPIVCQLLINRGIETPEQAQ
AFLEPESLNLPSPLTEFPDLAMSVELLQEAIASQSKIAICGDYDADGMTSTALLLRSLRS
LGAQVDYAIPSRMHEGYGINKRIVEEFHSEGVKLILTVDNGISAFEPIARAKELGLNVII
TDHHDIPQKLPPADAILNPKLIAESSPYRGVAGVGVAYILAVSLAQKLDKTKGLIQPMLA
LFTLGTIADLAPLSGVNRRWVKRGLKLLPKSQLPGVQALIQVAGVQAINSKFKIPFGNAK
GEQNSKLINNDSNKDLTYGVPNPQSPVPNPQSLKPEDIGFRLGPRINAVGRIGDPLTVIE
LLTTDDEGLALERAMQCEQANTSRQQMCEEIEQQAIAHVEDLYATSLQQDRVLVVIQPNW
HHGVIGIVASRLVERYGVPVFIGTYEDEELIRGSARSIPEFNVFEALEYCHDLLGKYGGH
KAAGGFSFPATNLQKLRSRLSEFANQCLQPQHLKPLLQIDVEANFNQIHQELYQQLNSLH
PCGIDNPDPVFWTPNVQVVEQQIVGKGHIKVTLSQTIEGQPYQFKAIAWRWRDYYPLPPR
LDIAYKLRENNFNGNTSLELELLGVRLAQKQLEAQSHQLQLFYQASSKPLRTAFKYNQRQ
YTCGVYQNNSLPELRIKNSDGKVLVMQPGNTIGLLGTSREDALEIDLTLPQYDSIVQAAI
QALSMLSAEC
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgctagaccgacctcctacggaactatcaaaacctcgcaggcgcttacctaatcagcgt
tggcaaattcacctacaaaaaacagatttagcccaaaaactggcagatgcggcaaatctt
tcgcctattgtttgtcaattgctgattaatcgtggtattgaaacaccagaacaagcacaa
gcatttttagaacctgaatccttaaatttaccttcgccattaacagaatttccagatttg
gcgatgagtgtggagttattacaagaggcgatcgcttcccaaagtaaaatagcaatttgc
ggtgattatgatgcagatggaatgactagcaccgctttacttttgcgtagtctccgcagt
ttaggcgctcaagtagattatgctattcccagccggatgcacgaaggttatggtatcaat
aagcggattgtagaagaatttcatagtgaaggtgtcaagttaatcctcactgttgataat
gggatttctgcatttgaaccaattgctagagccaaagaactgggtctcaatgtcattatc
accgaccatcacgacattccccaaaaactacccccagccgatgcaatcctcaacccaaaa
ctcatcgctgaatcttcaccatatcggggtgtagctggtgttggcgttgcttatattttg
gcagtatctctggcacaaaagctagacaaaaccaaaggcttaattcagccgatgttagca
ctgttcaccttgggaacgatcgccgatttagctcccttaagtggtgtcaatcgtcgttgg
gtaaaacgtggtttaaagctattacctaaatctcaattaccaggagtccaagcattaatc
caagttgcaggagtacaagcgatcaattcaaaattcaaaatacccttcgggaacgccaag
ggcgaacaaaattcaaaattaatcaataatgactctaataaggatttaacttatggtgtc
cccaatccccaatccccagtccccaatccccaatccctcaaaccagaagatattggcttt
cgtttagggccgcgtatcaatgcagttggtaggattggcgaccctttgacggtaattgaa
ttactgacaacagatgatgaggggttggcgttagaacgcgctatgcagtgcgaacaggct
aatactagccgtcagcaaatgtgcgaagaaattgaacaacaagcgatcgcccacgtagaa
gatttgtatgcaacatctctacaacaagaccgggtattggttgtgatccaacccaattgg
catcatggtgtaattggtattgtcgcctcccgcttagtggaacgttacggtgttcccgtc
tttattggtacttatgaagatgaagaactaattcgcggttcggctaggagtatcccggaa
tttaatgtatttgaggctttagaatattgtcacgacttgttgggtaaatatggtggtcac
aaagccgccggcggattttctttccccgctactaatttacagaagttgcgatcgcgtctg
tctgagtttgctaatcaatgtttgcaaccccaacacctcaagcccttactgcaaattgat
gttgaggctaacttcaatcaaatccatcaagaactgtatcaacagctaaactctctccat
ccttgcggtattgataaccctgatccggttttctggacacccaatgttcaagttgtagaa
caacaaatagtcggcaaaggacatattaaagtcacactcagccaaactatcgaaggtcaa
ccatatcagtttaaggcgatcgcttggcgttggcgtgattattaccctttaccaccaaga
ttagatatagcttacaaattgcgcgaaaataactttaatggcaataccagcctggagttg
gaattattaggtgtaagactggctcagaaacaacttgaggcgcagtcccaccagttacaa
cttttttatcaagcttcttctaaacctttaagaaccgccttcaagtacaatcaacgtcaa
tatacttgcggagtctatcaaaataattctcttcccgaactcagaattaaaaactcagat
ggcaaagttctagttatgcagccgggaaatacaattgggttactaggaactagtcgtgaa
gatgccctagaaatcgacttaactttaccccaatatgattctattgttcaagctgctatc
caagcattgtcaatgctgagtgctgagtgctga
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