Trichormus variabilis: Ava_2696
Help
Entry
Ava_2696 CDS
T00277
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ava
Trichormus variabilis
Pathway
ava03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ava_2696
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ava03019
]
Ava_2696
03400 DNA repair and recombination proteins [BR:
ava03400
]
Ava_2696
Enzymes [BR:
ava01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ava_2696
Messenger RNA biogenesis [BR:
ava03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ava_2696
DNA repair and recombination proteins [BR:
ava03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Ava_2696
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HTH_40
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
GerE
ResIII
HTH_38
HTH_24
HTH_5
MarR_2
MarR
HTH_7
HTH_20
DUF6115
HTH_IclR
HTH_11
Sigma70_r4_2
HTH_28
Motif
Other DBs
NCBI-ProteinID:
ABA22309
UniProt:
Q3M9M7
LinkDB
All DBs
Position
3332686..3334842
Genome browser
AA seq
718 aa
AA seq
DB search
MLQYPNLEQALKYHFGYDNFRPGQRQIIEDALQNRDLMVVMPTGGGKSLCFQLPALMKQG
LTVVVSPLIALMQDQVEALRNNNISATFLNSSLNAYQVRSREEAILNGKVRLLYVAPERL
LSERFLPFLDLVNEKVGISIFAIDEAHCVSEWGHDFRPEYRQLKSLRKRYPNVPVLALTA
TATDRVRSDIIQQLGLKQPSIHLASFNRQNLYYEVRPKSKQAYAELLELIRDNEGSAIIY
CLTRKKVEELTFKLQKDKISALSYHAGLPDDERSKNQTRFIRDDVRVMVATIAFGMGINK
PDVRLVVHFDIPRNLESYYQESGRAGRDGEPSRCTIFFSFGDIKTIEWSIEQKTDPQEQL
IAKQQLRQMIDYAEGTDCRRTIQLGYFGERFAGNCGNCDNCRYPKPMQDWTIEAMKFLSC
VARCKERFGMLHIIDVLRGAKKDKIIQYEHDKLSTYGIGKDRTVDEWRTLGRSLLHQGLL
EQTSDGYSVLKLNALSWEVMKRQRQVFLSVPVAQKLSLIQETPKFEEAEALLHRLRSLRK
QLADEQSVPPYVVFHDSTLKLMVQVQPQNLLEFSKLSGVGSHKLAQYGEKFIAEIRAYRQ
EKHPQEKPVNLAPTASVVSDSEIQTLQLHQQGLSIAEIARKRKLSPATISTHLGKLIEKN
QPVDLNQLVPLEHQQKIWQVLEVLGDIALTPIKEQLGESYSFEEIRLVREKWRRQNRK
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgcttcagtatcccaatctcgaacaggcgctaaaatatcacttcggttacgataacttt
cgtcccggacaacggcaaataattgaagatgcgctgcaaaatcgagatttaatggtagtg
atgcctacgggtggaggaaagtctttgtgctttcagttacctgcactcatgaagcagggt
ttgactgtggtggtatcaccgttgattgctttgatgcaagaccaagtggaagcactacgt
aataataatatctctgccactttccttaatagtagtttgaatgcgtatcaggtgcgatca
cgtgaggaagccattctcaatggtaaggtaagattactttacgtcgctccagaacgtctc
ctcagtgaaagatttctgccatttctcgatttagtcaacgaaaaagttggcatatctatc
tttgcaattgatgaagcccattgtgtctctgagtggggacacgatttccgtccagaatat
cgccaattaaaatccctacgcaagcgttacccaaatgttcccgttttggcacttaccgcc
acagccacagaccgcgtccgttctgatatcatccaacaactgggattaaagcaaccaagt
attcatcttgccagttttaatcgccaaaatctttattacgaagtccgccccaaaagtaaa
caagcttacgctgaattattagaattaattcgagataatgaaggttcagcgattatttat
tgtttaactcggaaaaaagttgaggaactaacatttaaactgcaaaaagataagatttcc
gccttatcttatcatgccggattacctgatgatgagcgtagcaaaaaccaaacgcggttt
attcgggatgatgtgcgggtaatggtagccacaatcgcctttggcatgggtattaataag
ccagatgtgcgcttagtggtacattttgatattccccgaaatttggagagttactatcaa
gaatcaggtagggctggtagggatggagaaccatcacgctgcacaatcttttttagtttt
ggtgatattaaaactattgaatggagtattgagcaaaaaacagacccccaagaacagttg
attgctaaacaacaactgcgacagatgatagattacgctgaggggacagactgtcgtcgg
acaattcaactgggttattttggtgaaaggtttgcgggtaattgtggtaactgtgataat
tgccgttatcctaaacccatgcaagactggacaattgaggcgatgaagtttctatcttgt
gtagcccgttgtaaagaaaggtttgggatgctacacataattgatgtgttgcggggggca
aaaaaagacaaaatcattcaatatgaacacgataagctttctacctatgggattggcaaa
gatagaacagtggatgagtggcggactctgggaagatcacttttacatcaaggtttattg
gaacagactagcgatggttactcggttttaaaattaaacgccctcagttgggaagtgatg
aagcgacaacgccaagtgtttctctctgttcctgtagcacaaaagctgagtttgatacaa
gagactcccaaatttgaagaagcagaagcattattacatagactgcgatcgctgcgtaaa
caacttgctgatgaacagtctgtaccgccctacgtcgtcttccacgattccacattaaag
ttaatggtacaggtgcaaccgcaaaacttactggaattctctaaactatctggcgttgga
agtcacaaattagcccaatatggtgagaaattcatcgccgaaattcgcgcctaccgccaa
gaaaaacatcctcaagaaaaaccagttaatcttgcacctacagccagtgtagtttccgat
agcgaaatacagaccttacaattacatcaacaaggtttaagtattgccgaaatagcccgc
aaacgcaaactcagtccagcaacaatttctactcatttaggtaaactgattgagaaaaat
cagccagtcgatttaaaccaactggttcccttagaacatcaacaaaaaatttggcaagta
ctagaagtgcttggtgatatagctttaacacccattaaagaacagttaggtgaaagctat
tcttttgaagaaattcgcttagtcagagaaaaatggcggcgacaaaacagaaagtaa
DBGET
integrated database retrieval system
