Trichormus variabilis: Ava_2767
Help
Entry
Ava_2767 CDS
T00277
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ava
Trichormus variabilis
Pathway
ava03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Ava_2767
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ava03400
]
Ava_2767
Enzymes [BR:
ava01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ava_2767
DNA repair and recombination proteins [BR:
ava03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Ava_2767
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
UB2H
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ABA22380
UniProt:
Q3M9F6
LinkDB
All DBs
Position
3412791..3416357
Genome browser
AA seq
1188 aa
AA seq
DB search
MAFSSIVRALARSPLTTELLSKLNRQQDLRLNGIPRLPKGLVASALAQNSGNNLFVVCAT
LEEAGRAYAQLEAMGWQTVHFYPTSEASPYEPFDPETEMTWGQMQVLADLVKSQPSGFGS
SQSTVTAKTATASQSTVNSQQSTVNGQQNKIAVVATVGALQPHLPPPDAFIPFCLTLKRG
LEFDLETFSEKITILGYERVPLVETEGQWSRRGDIVDVFPVSSELPVRLEWFGDEIEQIR
EFDPNTQRSALDKITEIVLTPTSFTPIITTALEESAEYQVLSADSEINSALIEGSRRFLG
LAFERPASVLDYLPENTLITIDEPEQCHAHSDRWVENAEEQWSLGTGETDLGSVQLPKIH
RSFEECLADATRFKTLYLSELSEENSGVNLASRSVPVTPHQFAKLADTLRQERDRNFSIW
LISAQPSRSVSLLQEHDCPAQFIPNPRDYQAIDKLQINHTPVALKYSGLAELEGFILPTY
RLAVITDREFYGQHSLATPNFVRKRRQAASKQVDPNKLRPGDYVVHRSHGIGKFVKLESL
TINDETRDYIVVQYADGLLRVAADQVGALSRFRATGDKPPELHKMTGKAWDNTKNRVRKA
IKKLAVDLLKLYAARSQQQGFAYPQDMPWQEEMEDSFPYQATTDQLKAVQDVKRDMESDR
PMDRLVCGDVGFGKTEVAIRAIFKAVTSGKQVALLAPTTILTQQHYHTIKERFAPYPVNV
GLLNRFRTAEERRNIQKRLATGELDIVVGTHQLLGKSVNFKDLGLLVIDEEQRFGVNQKE
KIKSLKTQVDVLTLSATPIPRTLYMSLSGIREMSLITTPPPTRRPIKTHLSPRNPESVRS
AIRQELDRGGQVFYVVPRVDGIEEITANLREMVPGARFAIAHGQMDESELESTMLTFSNG
DADILVCTTIIESGLDIPRVNTILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQR
ELSDAARQRLRAIQEFTQLGSGYQLAMRDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLE
ESIREIRGQEIPKVDDTQIDLNLTAFIPADYITDIDQKMSAYRAVAAAKSKDELTQIAAE
WSDRYGTLPVSANQLLRVMELKQLAKKLGFSRIKPESKQHVVLETPMEEPAWNLLAANLP
EHLKTRFVYSPGKVTVRGLAVLKADQQLQSLIDALGRMQGAIAEAAIV
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atggctttttcttctattgtgcgtgccttggcgcgatcgccactcaccactgagttactt
tctaagctcaatcgccagcaagatttgcgattaaatggcattccccgtctgcctaagggc
ttggtggcttcggctttggcacaaaattctggcaataatttgtttgtggtttgcgccact
ttagaagaagctggacgcgcttacgcacagttggaggcgatgggatggcaaacagtacat
ttttaccccacttcggaagcctctccctacgaaccatttgacccggaaacggaaatgact
tggggtcagatgcaggtgttggctgatttggttaaaagtcaaccctccgggttcggcagt
tcgcaatcgacggtaaccgccaagactgcgactgcctcacagtcaacagtcaacagtcaa
cagtcaacggtcaatggtcaacaaaataaaatagctgttgtggctactgttggggcgtta
caaccccatttaccaccaccagatgcttttattcctttttgcctgactctgaagcggggg
ctggaatttgatttagagaccttcagtgagaagattaccattttgggctatgagcgtgtt
cccttggtggaaacagaaggtcagtggagtcggcggggggatattgtggatgtgtttccc
gtttcctcagaactaccggtacggttggaatggtttggggatgaaatcgagcaaattcgg
gaatttgaccccaatactcaacgctcggcgcttgacaagataacagagattgtgcttaca
cccacaagctttacgcctattatcactacagccctggaggagagtgctgagtatcaagtc
ctaagtgctgattcagaaattaattctgcactcatagaaggtagtcggcggtttttgggt
ttagcttttgagcgacctgcatctgttttggattatttaccggaaaataccttaattaca
attgatgagccagaacagtgtcatgctcatagcgatcgctgggtggaaaatgcagaggaa
caatggtccctgggaacaggagaaacggatctgggaagtgtacaattacccaaaattcat
cggtcttttgaggaatgtttggctgatgcgactcgatttaaaaccttatatttatcggaa
ctatcggaagaaaatagcggggtgaatttagctagtcggtctgtgccggtaacaccccat
caatttgctaaactggcagacacattaaggcaagagcgcgatcgcaatttctcgatttgg
ttaatctcggctcaaccttcccgttctgtttctctattacaagaacacgattgtccggcg
cagtttatccccaatccccgcgattaccaagcaattgacaagctgcaaatcaaccacacc
cccgtagcgttgaaatattctggtctggcggaactggagggttttattctccctacctat
cgcctagcagtcatcaccgaccgggaattttatggtcaacactccctagctacaccgaat
tttgtccgtaagcgtcgtcaggcggcttctaaacaagttgacccgaataagctgcgtcca
ggggattatgtcgttcacaggagtcatggaattggtaagtttgtcaagctggagagtctg
acaattaacgatgaaacccgtgattatatcgttgtccagtatgctgacggtcttttaaga
gtagcggctgatcaagtgggtgctttatctcggttccgcgctacgggagataaaccgcca
gaactgcataagatgacgggaaaagcttgggacaataccaaaaaccgcgtccgcaaagcg
attaagaaattagcagtagacttgctgaaattatatgcagcgcgatcgcaacaacaaggt
ttcgcctatccccaggatatgccttggcaagaggaaatggaagattctttcccctaccaa
gccacaaccgaccagctaaaagccgtccaagatgtgaaacgggacatggaaagcgatcgc
ccaatggatcgcttagtttgtggtgatgtgggttttgggaaaacggaagtagcgattcgc
gccatcttcaaagcagtgacctctggtaaacaagtcgctttacttgcaccaactaccatc
ctcacccagcaacattaccacaccattaaagaacgctttgccccttaccctgtgaacgtc
ggcttattaaatcgttttcgcacagccgaagaacggcggaacattcaaaagcgattggcg
actggtgagttagatattgtggttgggacacaccagcttttaggtaaaagtgtcaacttc
aaagatttaggactgttggtcatagatgaggaacaacgctttggggtgaaccagaaggag
aaaattaagtccttgaaaacccaagttgacgtattgactctctccgccacccccattccc
cgcaccttgtatatgtctttgtctgggattcgggaaatgagcttgattaccacaccaccc
cctaccagacgaccaattaaaacccatctttcacccagaaacccggaaagtgtccgcagt
gctattcgtcaagaacttgaccgtggcggacaggtattttatgtagttccacgggtcgat
gggatagaagagattacagccaatctgcgggagatggttcccggagccagatttgcgatc
gctcacgggcaaatggatgagagcgagttagaatcaactatgctcacctttagtaatggt
gatgcagatattctggtatgtaccacaattattgaatctgggttagatattccccgcgtc
aacaccatcttaattgaagatgctcaccgctttggcttatcccaactttaccagttacgg
ggaagggtaggacgagcaggaattcaagcccacgcctggctattttaccccaaacaacga
gaactatctgatgccgcccggcaacgactacgagcaattcaggaatttactcaacttggt
tccggctatcaactagccatgcgcgacatggaaatccggggtgtgggtaacttgctgggt
gcagaacaatcagggcaaatggaagcgatcggttttgatttatacatggaaatgttagaa
gaatcaatccgagaaattcgcggtcaagaaattcccaaagttgacgatacccaaattgac
ctcaacctcaccgcttttatccccgccgattacattaccgacattgaccaaaaaatgagc
gcatatcgtgcggtagcggcggctaagtccaaagacgaattaacccagattgcagctgag
tggagcgatcgctatggtactttaccagtcagcgccaatcaactcttgcgggtaatggaa
ctcaaacaactagcgaaaaagttaggttttagccgcatcaaaccagaaagtaaacagcac
gttgttctagaaaccccaatggaagaacctgcatggaatttacttgcggcgaacttacca
gaacacctgaaaacccggtttgtttattctccaggtaaagtcacagtcaggggtttagca
gtcctcaaagccgaccaacaattacaaagtttgattgatgcgttagggagaatgcaggga
gcgatcgcagaagcagctattgtttaa
DBGET
integrated database retrieval system
