Trichormus variabilis: Ava_2854
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Entry
Ava_2854 CDS
T00277
Name
(GenBank) DNA topoisomerase IV subunit A
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
ava
Trichormus variabilis
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ava03032
]
Ava_2854
03400 DNA repair and recombination proteins [BR:
ava03400
]
Ava_2854
Enzymes [BR:
ava01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
Ava_2854
DNA replication proteins [BR:
ava03032
]
Prokaryotic type
DNA Topoisomerases
Ava_2854
DNA repair and recombination proteins [BR:
ava03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Ava_2854
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
DUF6115
Motif
Other DBs
NCBI-ProteinID:
ABA22467
UniProt:
Q3M969
LinkDB
All DBs
Position
complement(3543941..3546448)
Genome browser
AA seq
835 aa
AA seq
DB search
MAKQLNLLSTGQVITTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHEL
GLTPDRPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLGGHGNFGSVDND
PPAAMRYTETRLAPISHEGMLTEIGEETVEFVGNFDNSQQEPTVLPAQLPFLLLNGCSGI
AVGMATNIPPHNLGEIVDGLIALIDQPDLADEKLLELIPGPDFPTGGEIVGETGIREAYI
TGKGGIVLRGVATVEEIPGGRGSKRRMAIIVTELPYQVNKAGWIEKVAELVNQGRLQGIS
DLRDESDREGMRVVIELKRDTNPQEVLQHLYHQTALQTNFGAILLAIVEGQPRQLSLRQL
LQEFLNFREHTLNRRYSYELGKAASRLNTVEGLLKALSNLDEVIEILRQAPDGSTAKVTL
CSQLDLSEDQADAILSMPLRRLTSLEQQNLQREFGELSEQITLLDRLLSDRKELLKALKK
DLRSLKRKYGDPRRTKLGAKSLEELPKNKKADKHNSSAKTDEDTENLSPLEPAEEAILEI
THRGYLRRIQPGKKSKVENGLLEHDFIIQTNITDTHKELLVLTNGGKLYPVKVGDIPLTT
GRSPRGTPLITMLTTTAQGNQEPVVSRLLLPENLAAQQLILLTKQGRIKRLSLEELTNLT
RRGVTILKLKDDDELLLTQFSKAGQHLILASSGGRLLRFSANDEQLPIMGRTAMGLQAFR
LLRNQCMVGCVNAAQAEYLLLVTEEGYAKRLPVNQIKSANRGDLGTQSMKFVNKTDNLAA
MVGANTSSEVALLTNRERVVRISTDTVPILPRDGKGETILQLNRDEKVIAVVEVR
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaacagttaaaccttctctccacgggacaggtaatcacaacagccctgcacaca
gagatgcaacggtcttatctcgaatatgccatgagtgtgattgttggccgagcattacca
gatgttcgtgatggcttaaagccagttcatcggcggattttatatgccatgcacgaactt
ggtttaacccccgatagaccataccggaaatgcgcccgtgtggtgggggatgtgctgggt
aaataccaccctcatggcgatcaagctgtttatgatgctttggtgaggctggtgcaggat
ttttccagccgttaccctttacttggtggacatggtaattttggcagcgtcgataatgac
ccaccggcggcgatgcgttacacagaaacgcgtctagctcccattagtcatgagggaatg
ctgacagaaattggtgaagaaactgtggaatttgtgggtaactttgataactcccaacaa
gagccgacagtattacctgctcagttgccgtttttattgctgaatggttgttcaggaatt
gcggtggggatggcgacaaatattcccccgcataatttaggggaaatagttgatggtttg
attgccctcattgaccaaccagatttagctgatgaaaaattattagagttgataccgggg
ccagactttcccactggtggggaaatagttggtgagactgggattcgggaagcttatatc
acgggtaaaggtggtattgtcctgcggggtgtggctaccgttgaggaaattcctggcggt
aggggaagtaaacgccggatggcaattatcgtcacggaattgccttatcaggtgaataag
gctggctggattgagaaagtcgcggaattagtcaatcaaggccgcctgcaaggaatttct
gatctgcgggatgaaagcgatcgcgaagggatgcgggttgtgattgaactcaaacgggat
accaatccccaagaagttctccagcatttgtatcatcaaacagctttgcaaactaacttt
ggggcaattcttttggctattgttgagggacaaccccgccagttaagtttgcggcaattg
ttacaagagtttttgaattttcgagaacacaccctcaatcgtcgctacagttatgagttg
ggtaaagcagccagcagattaaacaccgtcgaaggtttactcaaagccttatctaactta
gatgaggtcatcgaaattttgcgacaagcacccgatggaagtacggcgaaagttaccctg
tgtagccaactagatttgagtgaagaccaagcagatgcaattttgtccatgccattgcgt
cgccttaccagtttagaacaacagaacttacagcgtgagtttggggaactgagcgaacag
atcactttgttggatcggttattaagcgatcgcaaagaattactcaaggcgctgaaaaaa
gatttgcgatcgctcaaacgaaaatacggcgatcctcgacgcacaaagttaggcgctaaa
agtttggaggaactacccaaaaataaaaaggctgataaacacaatagttctgccaaaaca
gatgaagatacagaaaatctttcacctttagaacctgcggaagaagcgattttagagatt
acccatcgcggatacctacgccggattcagccagggaaaaaatctaaggtggaaaatggt
ctgctagaacatgacttcattatccaaaccaacatcaccgacacccacaaagaattatta
gtactcaccaacggcggtaaactctacccagtgaaagtgggagacattcccctaactact
ggacgttcaccaaggggaacaccattgattaccatgctaactaccacagcccaaggtaat
caagaacccgtagtcagccgccttttactaccagaaaatttggcggcgcaacaattaatt
ctcttaactaagcagggaagaattaaacgcctatcgttggaagaattaactaacttgact
cgtcgtggtgtaacgattttaaaactcaaagatgatgatgaattactcttaactcagttc
agtaaagcaggacagcacctaattttggctagttctgggggacgattgttgagattctct
gccaatgatgaacaactaccaattatgggtaggacggcgatgggtttacaagcattccgg
ttgctgagaaatcagtgtatggttggttgcgtgaatgcagcacaagcagagtatttattg
ttagtcactgaggaaggatacgcgaaacgcttaccagtcaatcagatcaagtcagcaaat
cgaggtgacttaggtacacaatccatgaaatttgtcaataaaaccgataatctcgcggct
atggtaggggcaaatacctctagtgaagtggcattacttaccaatagagagcgagtagtg
cggatatccacagacacagtaccgatattgcccagagatggtaaaggtgaaaccatcctc
caactcaaccgcgatgaaaaagtgattgcagttgtggaagtgcgataa
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