Trichormus variabilis: Ava_2938
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Entry
Ava_2938 CDS
T00277
Name
(GenBank) Phycobilisome linker polypeptide
KO
K02290
phycobilisome rod-core linker protein
Organism
ava
Trichormus variabilis
Pathway
ava00196
Photosynthesis - antenna proteins
ava01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09100 Metabolism
09102 Energy metabolism
00196 Photosynthesis - antenna proteins
Ava_2938
09180 Brite Hierarchies
09181 Protein families: metabolism
00194 Photosynthesis proteins [BR:
ava00194
]
Ava_2938
Photosynthesis proteins [BR:
ava00194
]
Antenna proteins
Phycobilisome - Cyanobacteria, Red alga [OT]
Phycocyanin (PC)
Ava_2938
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PBS_linker_poly
Motif
Other DBs
NCBI-ProteinID:
ABA22549
UniProt:
Q3M8Y7
LinkDB
All DBs
Position
3641979..3642692
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AA seq
237 aa
AA seq
DB search
MALPLLEYKPTTQNQRVQSFGTADVNEDTPYIYRLEDANSPSEIEELIWAAYRQVFNEQE
ILKFNRQIGLETQLKNRSITVKDFIRGLAKSERFYQLVVTPNNNYRLVEMSLKRLLGRSP
YNEEEKIAWSIQIASKGWGGFVDALIDSTEYEQAFGDNAVPYQRKRLTTDRPFSFTPRYG
ADYRDRAGIVRPGRMSNWNNSANQNYDGMAILGVLLAISTGLTFLFVLNWLGISSSF
NT seq
714 nt
NT seq
+upstream
nt +downstream
nt
atggcattacctttattggaatacaaacccacaactcaaaatcaacgagttcagagtttt
gggacggcggatgtcaatgaggacaccccttatatctaccgtctagaagatgccaactct
cccagtgaaattgaagaactgatttgggctgcctatcgccaagtctttaacgaacaagag
attctcaagttcaacagacaaatcggcttagaaacccaactcaaaaatcggtcaatcaca
gttaaggattttattcggggtttagccaagtcagagcgcttttatcagctagttgttaca
cccaacaacaactatcggctggtggaaatgagtctcaagcggctattgggacgctctccc
tataacgaagaagaaaaaattgcttggtcaattcaaattgccagcaaaggttggggagga
tttgttgatgcactgattgatagtacagagtatgaacaagccttcggtgataatgccgta
ccctaccaacgcaaacggttgactacagaccgaccattcagctttacaccccgttatggt
gcagattaccgcgatcgcgctggtattgttagaccaggacgtatgagtaactggaataac
agcgccaaccaaaattatgatggaatggcaatattaggcgtattgctagccatcagtacc
ggactgacttttctattcgtcctaaattggttgggaatcagttctagcttctga
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