Trichormus variabilis: Ava_3017
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Entry
Ava_3017 CDS
T00277
Name
(GenBank) ABC transporter, transmembrane region
KO
K06147
ATP-binding cassette, subfamily B, bacterial
Organism
ava
Trichormus variabilis
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ava02000
]
Ava_3017
Transporters [BR:
ava02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB-BAC subgroup
Ava_3017
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
ABC_ATPase
AAA_22
DUF87
ABC_membrane_3
AAA_29
AAA
AAA_16
RsgA_GTPase
DUF815
AAA_18
MMR_HSR1
FtsK_SpoIIIE
AAA_25
TsaE
nSTAND3
AAA_8
AAA_14
AAA_23
NACHT
Motif
Other DBs
NCBI-ProteinID:
ABA22627
UniProt:
Q3M8Q9
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Position
complement(3739486..3741294)
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AA seq
602 aa
AA seq
DB search
MAIASPSHRVLQRRRHSAHPLQRLFDYGYQYRQQMLLAVGCSILNKLFDLAPPALIGMAV
DVVVKQQDSIIAQLGIKDIFGQFLIVALLTVITWILESFFEYRYRVLWRNLAQNIQHNLR
LDAYSHLQELELAYFEERSTGGLMSILSDDVNQLERFLDVGANDIIQVVTTIVVVGGAFF
ILAPSVAWMAILPMPFILWGSVAFQKLLAPRYADVREKVGLLNGRLSNNLSGITTIKSFT
AEEYEKGRLEIDSSAYRQSNTRAIALSAAFIPLIRMLILVGFTSLLLFGGMATVAGRMSV
GAYSSLVFLVQLLLWPLTRLGETFDLYQRAMASTNRVMELLDTPITAYTGNIALPVEEVR
GAVEFNNVTFAYKDRLPVVKHLSLQIPAGNTIAIVGSTGSGKSTLVKLLLRLYEVQAGKI
TLDGINIEDLKLRDLRRSMGLVSQDVFLFHGTVAENIAYGTFDATEQEIITAAKIAEAHE
FISHLPQGYETIVGERGQKLSGGQRQRIAIARAVLKNPPILILDEATSAVDNETEAAIQR
SLERITINRTTIAIAHRLSTIRNADCIYVMEHGQLVESGTHEALLDKDGIYANLWRVQSG
LK
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
gtggctatagcatctccatctcaccgggtattacaaaggcgtagacattctgcacatcct
ttacagcgcctgtttgactatggataccagtatcgtcaacaaatgttgttggcggttggt
tgttcaattctaaataagctttttgatttagctccaccagctttaattggtatggcggtg
gatgtggtagttaagcagcaggattctatcattgctcagttgggaataaaagatatcttt
gggcaatttttaattgtggcgctgctcacagtcatcacttggatactagagtcatttttt
gaatatcgctatcgcgtgttatggcgtaacctagcacagaatatccagcataacttacgt
ttggacgcatatagtcacctacaagaattggaattggcttattttgaagaacgtagcaca
ggtggtttaatgtctatcctcagtgatgatgttaaccaactagaacgttttttggacgtg
ggcgctaacgacattatccaggtagtcacgactattgtagtcgttggcggcgccttcttt
attttggctcccagcgtagcttggatggctattttaccaatgccatttattctgtggggt
tcggtggctttccagaaattgctagcaccacgttacgccgatgtacgggaaaaagtaggg
ttactcaatgggcgtttgtccaataacctgagtggtatcaccacaattaaaagctttacg
gcggaagagtatgaaaaagggcgtttagaaatagatagttccgcttatcgtcaaagtaac
acaagagcgatcgccttgtctgccgcttttattcccctaattcggatgctaattctcgta
gggtttacctcattgctgctatttgggggtatggcaaccgttgcggggagaatgtccgta
ggcgcttatagttcattagtatttttagtccagctactactttggcctttaactagattg
ggggaaacttttgatctttatcaaagggctatggcttccactaatagagtgatggagttg
ttagatactccgattacagcgtatacaggaaatattgctttacctgtagaagaagtacgc
ggtgccgtggaatttaacaatgttacttttgcctataaagatagattacctgtagttaaa
catttatctttgcaaatacccgcaggtaatactattgctattgttggttctactggttct
ggtaaaagtactttagtaaaactgctgctgcgcttgtatgaagtgcaagctgggaaaata
accttagatgggatcaatatagaagatttaaagttacgcgatttacgccgtagtatgggt
ttagttagtcaagatgtattcctatttcatggcacggtagctgagaacatagcatacggt
actttcgatgcgacagaacaagaaatcatcactgctgccaagatagcagaagcgcacgaa
tttattagccatctaccccagggttatgaaacaattgtgggagaaagggggcaaaagtta
tctgggggacaaagacaacgaatagccattgcacgggcggttttgaagaatccaccgatt
ttgattttagatgaagctacctcggcagtggataatgaaacagaggcagcaattcagcga
tcgctcgaacgaattaccatcaatagaactacaattgcgatcgctcaccgtctttccaca
attcgcaatgctgattgtatatatgtcatggaacatggacaattagtggagtcaggaacc
catgaagcattgttagacaaggatggaatatatgctaacctctggcgtgtgcagagtggt
ttgaaatga
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