Trichormus variabilis: Ava_3081
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Entry
Ava_3081 CDS
T00277
Name
(GenBank) RNAse III
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
ava
Trichormus variabilis
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
Ava_3081
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ava03019
]
Ava_3081
03009 Ribosome biogenesis [BR:
ava03009
]
Ava_3081
03036 Chromosome and associated proteins [BR:
ava03036
]
Ava_3081
Enzymes [BR:
ava01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
Ava_3081
Messenger RNA biogenesis [BR:
ava03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Ava_3081
Ribosome biogenesis [BR:
ava03009
]
Eukaryotic type
90S particles
RNase
Ava_3081
Prokaryotic type
rRNA processing factors
Ava_3081
Chromosome and associated proteins [BR:
ava03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
Ava_3081
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
DSRM_2
RM44_endonuclase
DND1_DSRM
Dicer_dsRBD
Motif
Other DBs
NCBI-ProteinID:
ABA22690
UniProt:
Q3M8J6
LinkDB
All DBs
Position
complement(3828860..3829546)
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AA seq
228 aa
AA seq
DB search
MHKILIFRDEKLLRRALTHRSYVNENPEEGEHNERLEFLGDAILNFLSGEYLYRSHPDRG
EDELTRRRSALVDEKQLAKFAIEVGLDFRMRLGKGAIRDGGYQNPNLLSSTFEAVIGAYY
LDNNSNIEAVRVIIEPLFESVPEQIVVVRSNVDSKNRFQEWVQRNIGPTPPKYLTKQISG
PSHAPEFQAKVLVGEKEYGEGIGKNKKEAEKAAAENALANLNKQELLP
NT seq
687 nt
NT seq
+upstream
nt +downstream
nt
atgcacaaaattctaatatttcgtgatgaaaaacttttacgccgcgcccttacccatcgt
tcttatgtaaatgaaaatccagaagaaggtgaacataatgaacgcttagaatttcttggt
gatgcgatattaaatttcttaagtggtgagtatctctatcggagtcaccctgacagggga
gaagatgaattaacgcgacggcgttcggctttggtagatgaaaaacaactagcaaaattt
gccattgaggtaggcttagattttcggatgcgcctggggaaaggtgctattcgagatggc
ggttatcaaaatcctaatttacttagcagcacttttgaagcggtgattggtgcttattat
ttagataataattccaatattgaagccgtacgcgtaattatagaacctttatttgaatct
gtacccgaacaaattgtagtggtgcgttctaatgtagattcaaaaaatcggtttcaggaa
tgggtacaacgaaacatcggcccaactcctcccaaatacttaacaaaacaaataagtggc
ccttctcatgccccagagtttcaagctaaagttttggtaggagaaaaagagtatggggaa
ggtataggtaaaaataaaaaagaggctgagaaagcagccgccgaaaatgctttagctaat
ttgaataaacaagaattattgccataa
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